LOCUS AK240813 1801 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J065008C04, full insert
sequence.
ACCESSION AK240813
VERSION AK240813.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1801)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1801
/clone="J065008C04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="gamma-irradiated (45Gy), immediately after
irradiation"
/organism="Oryza sativa Japonica Group"
/tissue_type="leaf of seedling"
misc_feature 1..1801
/db_xref="Osa1:LOC_Os01g40870"
/note="(Rice Genome Annotation Project) aldehyde
dehydrogenase, mitochondrial precursor, putative,
expressed"
/note="mapping to R01-TIGRv4S1-000945F (Chr.1: short
arm=23445584, long arm=23447364, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 517 a 354 c 431 g 499 t
ORIGIN
1 cacctttttt tttttttttt ttcagaactt atgaacatta tgttttcatt tgctaggttg
61 acaaggtcca atttgagagg gttctcaagt acattgagat cggcaagaac gagggagcaa
121 ccctactcac aggtggcaaa cccactggtg acaaaggata ctacattgag cctaccatat
181 ttgtggatgt caaggtaacc agcttacatt tagaagcaca atcaaatcaa atcaacaatg
241 ctcatctggg ttgatcctcc atgcaggagg aaatgacgat tgcgcaagag gagatcttcg
301 gcccggtgat gtccctcatg aagttcaagt cagtactcaa aaacctcaca agtttcgatg
361 atctgatctc atctccaaaa caaacaaaaa aaaacattct gaaaacttga cttatgatct
421 gaactttttt ttttcttcag gacggtggag gaggcgatag agaaggccaa ctgcaccaag
481 tacgggctgg ctgccggcat tgtgaccaag aacctcaaca ttgccaacat ggtgtcgagg
541 tcagtgcggg ccggcacggt gtgggtgaac tgctacttcg ccttcgaccc cgacgcgccg
601 ttcggcgggt acaagatgag cgggttcggc cgggaccaag ggatggtcgc catggacaag
661 tacctgcagg tcaagaccgt catcaccgcc gtcccggact cgccctggta ctgataaatc
721 aaatcaagca gcagctatag ctagagtgta ccatgtacca tgaatgctgc agcctgtgta
781 gtgttttcgg atgtttttct ccttaattct gctgctgctt ggtgtggttg tatgtagttt
841 ggttgtgggg tgagatatgg tgcagattaa aaggggttct gatgatcatg atctgatcct
901 tgtttggttg aacttgttga gaaatggatg tatagaactc atgtgccatc gtttgaaatc
961 gtacaaaatg tgcctcaaag ttcaaagcag gttggattat tcgaacgggg tactgtgccc
1021 tgagcccctg accgccttgt tcggtatgga aggggttgaa ggggtttgga gggatttgag
1081 ggggaataat tccacaccac aataggtgtg gaataaatcc cctccaatcc ctctctcttg
1141 gggattaacc gaacatagca ttaacagtat gactggagtt gttttaattg tgttctctga
1201 taaatggcca gagccagatg caagaatgaa tactgagcaa taccattagg acgaatgcat
1261 gacggtctca agttgaaaac ggatgatata ggcagatata taagcactca tagaaacaac
1321 aggaaacttc ttaaaatatt tgccacgcat ttcagggcat cgtgatatgc taccgaactt
1381 ttggtttcca ttagtcagat gaaaattcca tgtcctgttt tgccgagcca tgtttttttt
1441 ttccgaaaga agaagaagaa aaaccaaagt aggaattttg tacaataact tttgttgcac
1501 agaaatcatc ttattggttt ggcattcatt tctgtaaatc aaaacatacc atattcattt
1561 ctaagttatg cacacactcg attagcaaga gaaaataata ttgcctcaaa atataaacag
1621 ttttagggtt ggacacgatg ttgatgggct atacccataa catgataatt tgatttaatc
1681 tatcataaac tagtggtaat ttgatgcata ttatgaagtc taatcttacc agtctgagga
1741 tgaactgtcg agggtcaagt cgaggatgac gagcggacga ggagggggaa agcaggagcc
1801 c
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