LOCUS AK240668 3170 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J033066E20, full insert
sequence.
ACCESSION AK240668
VERSION AK240668.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3170)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3170
/clone="J033066E20"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="callus"
misc_feature 1..3170
/db_xref="Osa1:LOC_Os09g14670"
/note="(Rice Genome Annotation Project)
phosphoenolpyruvate carboxylase 2, putative, expressed"
/note="mapping to R09-TIGRv4S1-000205R (Chr.9: short
arm=8691294, long arm=8696398, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 753 a 787 c 867 g 763 t
ORIGIN
1 gaccaagttc gcagcagcaa tcgtcttcct cttcttcttg ttgttgttgg cgatgtcggc
61 gatgtcggcg gcgggcggcg gcggcggcgt ggggaaggtg gagcggctgt cgtcgatcga
121 cgcgcagctg cggcagctgg tgccggcgaa gctgtcggag gacgacaagc tcatcgagta
181 cgacgcgctc ctcctcgacc gattcctcga cgtcctccat ggcctccacg gcgacgacct
241 caaggatctc gttcaagaat gctatgaggt ggccgcggag tatgaaacaa agcacgacgt
301 gcaaaagctc gatgaactcg gcaacatgat aacaagcttg gatccgggcg actcgattgt
361 tattgcgaaa gccttttcgc acatgcttaa cttggccaac ttggctgaag aagtccagat
421 cgcatacagg aggaggatca agctcaagaa gggtgatttc gctgacgaaa actcggcaat
481 gactgaatcc gacattgagg aaacactcaa gaggcttgtt tttgacctga agaaatcccc
541 tgctgaggtc tttgatgccc tcaagagtca gactgttgac cttgttttga ctgcacatcc
601 aacacagtct gtgaggaggt cactgctcca gaaacactcc aggattcgga actgtctggt
661 tcagctttat tcaaaggata tcactccaga tgacaagcaa gagcttgatg aggctctcca
721 gagagagatc caagctgcct ttagaaccga tgagatccga agaacacagc ccactcccca
781 agatgaaatg cgtgctggca tgagctactt ccatgaaaca atatggaagg gtgttccaaa
841 gttcttgcgc cgtgtggata ctgcattgaa gaacatcggt atcgacgagc gtgttcctta
901 caatgctcct cttattcagt tctcgtcttg gatgggagga gatcgtgatg gaaatccaag
961 agtcacacca gaggttacaa gggatgtctg cttgcttgca agaatgatgg cagcaaactt
1021 gtattgctca caaattgagg atctcatgtt tgatttatct atgtggcgat gtaacgagga
1081 gctacgctca cgagctgatg atctgcaccg ctcttctaag aaggacgcaa agcattacat
1141 agagttttgg aagaaggttc ctctgaatga accataccgg gtgatactga gtgatgtgag
1201 agataagctt tacaatacac gtgaacgatc acgggagttg ttgtccagcg gatattgcga
1261 catccctgag gaagcaactc tgacaaatgt tgagcagcta ttggagccct tggagctatg
1321 ctacaggtcg ctgtgcgcct gtggtgaccg tgccatcgct gatggaagcc ttcttgattt
1381 cttgcgccaa gtttccacct ttggactctc ccttgtgagg cttgacatta ggcaagaatc
1441 cgacagacac accgatgtcc ttgatgccat cacgacatac ctgggcatag gatcttaccg
1501 tgagtggtcc gaggaacgcc gtcaagagtg gctgttgtcc gaactcaacg ggaagcgacc
1561 attgtttggc ccagaccttc ccaggacaga tgaggttgct gatgttctag acacattcca
1621 tgtgattgcc gagctccctg ctgacagttt tggagcctat gttatttcca tggcaacagc
1681 cccctcggat gtccttgctg ttgagctcct ccaacgcgag tgccatgtca agacaccgct
1741 tagagttgtc cccctgttcg agaagttggc tgatcttgag tctgcccctg cggcattgac
1801 caggctcttc tcaataagtt ggtacaggca gaggatcaat ggtaagcagg aggtcatgat
1861 tgggtattca gattcaggca aggatgctgg ccgtctctcg gcagcttggc agatgtacaa
1921 ggctcaggag cagctcgtca aggtagcgaa ggatttcggg gtcaagttga cgatgttcca
1981 tggacgaggt ggaaccgttg gtaggggcgg tgggccgact caccttgcca tcttgtctca
2041 gcctccagac acgatcaacg gatcgctccg tgtcactgtt cagggtgaag tcattgagca
2101 gagctttggt gaggagcact tgtgtttcag gacactgcag cgtttcaccg ctgctacact
2161 tgagcacggc atgcatccac ccagtgcacc gaagccagaa tggcgagctc ttcttgatga
2221 gatggctgtg gtggcaacca aggagtatcg atccgtagtg ttccaagagc cacgctttgt
2281 ggagtatttc cgccttgcaa cacctgagac agagtatgga aggatgaaca taggaagcag
2341 gccatccaag aggaagccga gtggaggcat tgaatcactc cgtgcgatcc catggatctt
2401 cgcatggacg cagacccgct tccaccttcc cgtctggctt ggattcggtg ctgcattcaa
2461 gcacgccctt cagaaggaca tcaggaatct ccacatgctc caggagatgt acaacgagtg
2521 gccgttcttc agggtcactc tcgacctgat tgagatggtt ttcgccaagg gtaatcctgg
2581 cattgctgcc ctttacgaca aactcctcgt ttctgaggat ctacagccac tgggtggaag
2641 ctgagagcca actatgtaga gacacaaaag ctgcttcttc aggttgctgg ccatagggat
2701 cttcttgaag gtgaccccta cctgaagcag cggctccgac tccgcgacgc ctacataacc
2761 accctgaatg tctgccaagc ctacacgctg aaacggatcc gcgacccgga ttaccacgtc
2821 acgctgcgcc ctcacctgtc caaggaggtg atggatggga gcaagccggc cgcggagctt
2881 gtgaagctga acccgggtag cgagtacgcg ccagggctgg aggacaccct catcctgacc
2941 atgaagggca ttgctgcagg gttgcagaac actggttaag acttaggaga gattgcctga
3001 gtgccatctt ttttgtatct ttcctttgat catttgcctt gggccctgtt attttggata
3061 ctgctgaata ttggtctcct tactgaggga ggggtaacaa ataccggcgt ttttttgcct
3121 atgtatatta ttactgaaat aaaaggagac catgatcatt ataataacct
//