LOCUS AK122127 1771 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033132F08, full insert
sequence.
ACCESSION AK122127
VERSION AK122127.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1771)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1771
/clone="J033132F08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 97..1440
/db_xref="Osa1:LOC_Os01g18050"
/db_xref="RAP-DB:Os01g0282800"
/note="(RAP Annotation release2) Similar to Tubulin
beta-5 chain (Beta-5 tubulin)"
/note="(Rice Genome Annotation Project) tubulin beta-1
chain, putative, expressed"
/note="mapping to R01-TIGRv4S1-000552R (Chr.1: short
arm=10096129, long arm=10099726, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00806.1"
/translation="MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL
ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWA
KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP
DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT
TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR
GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQ
NKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRK
AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYEDEEEQVPEDE"
BASE COUNT 339 a 545 c 469 g 418 t
ORIGIN
1 ggtgttcccc catttgcaca cccacccccc ccttcactcc tctcctcttc ggccgctgcc
61 ccgctactcg cttctccgag gcaccaaccg gcagccatga gggagatcct gcacatccag
121 ggcgggcagt gtggcaacca gatcggctcc aagttctggg aggtggtctg cgacgagcac
181 ggcatcgacc ccaccggccg ctacgtcggc acctccgacc tccagctcga gcgcgtcaac
241 gtctactaca atgaggcctc ctgcggccgc ttcgtgcccc gcgccgtgct catggacctc
301 gagccgggta ccatggacag cgtccgcacc ggcccctatg gccagatctt ccgccccgac
361 aacttcgtct tcggccagtc cggcgccggc aacaactggg ccaaggggca ctacaccgag
421 ggcgcggagc tcatcgactc tgtgctcgat gtcgtcagga aggaggctga gaactgcgac
481 tgcctccaag gtttccaagt ttgccattcc cttggaggag gcactggatc tggaatgggc
541 acactcctga tctccaagat cagagaggag taccctgacc ggatgatgct cacattttct
601 gtcttccctt caccaaaggt ctcagacaca gttgttgagc cttacaatgc aactctctct
661 gtccatcagt tggtggagaa tgctgatgag tgcatggttc ttgacaatga ggcactttat
721 gacatctgct tccgcaccct caagctgacc actcctagct ttggcgacct gaaccacttg
781 atcagtgcta caatgagtgg agttacttgc tgccttcgct tccctggtca attgaactct
841 gacctccgca agctggccgt gaacttgatc cctttccctc gcctgcactt cttcatggtg
901 ggctttgcgc cactcacctc gcgtggctcg cagcagtatc gcgccctcac tgtccctgag
961 ctcacccagc aaatgtggga cgccaagaac atgatgtgtg ccgctgaccc gcgccatggc
1021 cgctacctca cggcctccgc catgttccgt ggcaagatga gcaccaagga ggtggacgag
1081 cagatgatca acgtccagaa caagaactcg tcctacttcg tcgagtggat ccccaacaac
1141 gtgaagtcca gcgtgtgcga catcccgccg cgcggcctct ccatggcgtc caccttcatc
1201 ggcaactcca cctccatcca ggagatgttc cgccgcgtga gcgagcagtt caccgccatg
1261 ttcaggagga aggccttctt gcattggtac accggcgagg gcatggacga gatggagttc
1321 accgaggccg agagcaacat gaacgacctt gtctccgagt accagcagta ccaggatgcc
1381 accgccgacg aggagggcga ctacgaggac gaagaggagc aggtccccga agacgagtaa
1441 tctcgccgga gtttctcctg ggatcccatc ttgagtgtcg cctgttgtgt cctaccgttt
1501 gggcaatctt tattattgtt tcggtatgat gatgcttaat tggttatgtg cttttgggta
1561 atgtagtagt agtacaatgc tgtgtggtcc gtagcgccgc tgatgctact gccactttaa
1621 tccgtttcac ctaccagacc atgtttggat tcgtatgcta tcgcatatgt ttggggagtg
1681 tattggattc ttgtactggt tttgattgct cccgttgctg tctcttgtct tgctgcatcg
1741 atgagaatct tgctgctgct ttgttgctgt c
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