LOCUS AK122126 1708 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033132D02, full insert
sequence.
ACCESSION AK122126
VERSION AK122126.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1708)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1708
/clone="J033132D02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1708
/db_xref="Osa1:LOC_Os01g62840"
/db_xref="RAP-DB:Os01g0847200"
/note="(RAP Annotation release2) Similar to
Mannose-1-phosphate guanyltransferase (EC 2.7.7.13)
(ATP-mannose-1- phosphate guanylyltransferase)
(GDP-mannose pyrophosphorylase) (NDP- hexose
pyrophosphorylase)"
/note="(Rice Genome Annotation Project)
mannose-1-phosphate guanyltransferase, putative,
expressed"
/note="mapping to R01-TIGRv4S1-001673F (Chr.1: short
arm=36722336, long arm=36724816, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 427 a 398 c 414 g 469 t
ORIGIN
1 gggaattctg aaagcctgaa cctctcgtcg tgtctcgtac tctcgttccc ctcccctcgc
61 gtcgcctctc cacttcgtct ctataaagtc ccacccaatt ctcgattccc aatccagcgc
121 agcacaaagc cctcctcctt ccaccgcagc tgcgctacct acctccaaga gggctggtcc
181 gctggtcgtg gagaaggaag agagatcttc caggctgatc cctcctattg ctttctcctt
241 cccgagcccg cttgaggatc cccgccggag tagggattag ggaggggaga acaggaggcg
301 gcgattcacc atgaaggcgc tcattcttgt tggaggcttc ggcactcgcc ttcggccttt
361 gacgctcagt ttcccaaagc ctcttgttga tttcgcgaac aagcccatga ttctgcatca
421 gattgaggcc ttgaaagaag ttggagtaac agaagttgtt ttagccatca actaccgacc
481 ggaggtaatg ctcaatttcc tgaaggactt tgaggataag cttggcatca caatcacgtg
541 ttcccaagag actgagccct tgggaactgc tggccctctt gctctagcaa gggacaagct
601 tgtggatgga tctggtgagc cattctttgt cctcaacagt gacgtcataa gtgaataccc
661 ttttgctgag ctcataaaat ttcacaagag ccatggtggt gaggcaacga ttatggtcac
721 caaggtggac gaaccatcaa aatatggtgt tgtggttatg gaggaggtca ctggaatggt
781 ggaaaaattt gttgagaaac caaaaatatt tgtaggcaac aagatcaatg cgggaattta
841 cttgttgaat ccatctgtcc tggaccgcat cgagctgaag ccaacttcaa ttgagaaaga
901 ggtctttcct cgaattgcat ctgatgcaaa gctctttgct ctggtccttc caggtttttg
961 gatggatgtt ggccaaccaa gggattacat tacaggcttg cgcctttatc tggattcact
1021 taggaagaga tcaaccaaca ggttagccac tggagcacac attgttggga atgtgctagt
1081 tcacgagagt gccaagattg gcgaaggctg tctgattggt cctgatgttg ctatcggtcc
1141 tggatgcgtc gtggagaatg gtgtgaggct ttcccgttgc acggtgatgc gtggcgtgca
1201 cattaagaag catgcttgca tatcaaacag cattattgga tggcactcaa ctgttggaca
1261 atgggcacgg atagaaaata tgactatcct gggagaggac gtacatgtag gtgatgaggt
1321 ctataccaac ggcggtgttg ttctcccgca caaagagatc aagtcaagca tcctgaagcc
1381 tgagattgtc atgtgaacta accctccttt tatgttatgg tatactcaag ttcttttaat
1441 gcagtatctt tagtttatac ctgtgatcct tccaagatgt tgacctagca tgtgtgttac
1501 tcacattctg aaaactgctt ctcaatgaga attcagtgtg ccatatttga ttgtaccttc
1561 atttggacca tccagtaaag ttctcaaccc tgcaccaaga ggaccagaag aaactctttt
1621 tcctataaaa gaagaggatc agccttgtac tttgttcttt ttgaaacaaa tatatactgc
1681 tatatggaac agacccatga tgtattgc
//