LOCUS AK121870 1408 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033103P10, full insert
sequence.
ACCESSION AK121870
VERSION AK121870.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1408)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1408
/clone="J033103P10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 260..1162
/db_xref="Osa1:LOC_Os02g13520"
/db_xref="RAP-DB:Os02g0228900"
/note="(RAP Annotation release2) Similar to
Auxin-responsive protein IAA18 (Indoleacetic acid-induced
protein 18)"
/note="(Rice Genome Annotation Project) OsIAA7 -
Auxin-responsive Aux/IAA gene family member, expressed"
/note="mapping to R02-TIGRv4S1-000420R (Chr.2: short
arm=7245056, long arm=7248588, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00699.1"
/translation="MGEASESMKKISRGRLGGSWMGEPSDHHRHGDEQEEEEKTLELS
LGLPGGGWRAACRDKGTTTKHSIAAAAAADDDDGDKSSMLSLGYSTLVSHSQGKANKN
KGSPEEEEAHPPPATGNNALASNNNGCFQTRSPSTPVVGWPPVRTFRRNLATSSKASL
ELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAA
QRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRL
RVLKTSDLSSSLITSGRKRTAAEC"
BASE COUNT 352 a 334 c 368 g 354 t
ORIGIN
1 ggggcggcat ctcagctcag ctcaggctca gctagacgct actcgcatcg gagcatcaca
61 ttgccgtgtg ccgttgctcg cattgcagct gcagctacta ctaccattcc cacacctttt
121 ctagctctct gttccacacc tctccctctt gcattgcagc caagacagca accagcagca
181 gcagcagctc agctagctag tttctgcttt cttgatttgt tcttggattt gggcgagctg
241 tacatctaga gagcgggtga tgggggaggc gtcggagagc atgaagaaga tcagcagagg
301 ccgtctcggc ggaagctgga tgggggagcc aagcgatcac catcgccatg gcgatgaaca
361 ggaggaggag gagaagacgc tggagctcag ccttgggctc cccggaggag gatggcgagc
421 ggcgtgcagg gacaagggga cgacgacgaa gcactccatt gcagcagctg ctgctgctga
481 tgatgatgat ggtgacaaga gctccatgct ctccctgggc tactccacac tcgtctccca
541 ctcgcaaggc aaggcaaaca aaaacaaggg gtccccagag gaagaagagg cacatccacc
601 accagctaca gggaataatg cacttgcatc caacaataat ggctgcttcc agacaagatc
661 tcctagtact cctgttgttg gttggcctcc ggttcgaaca ttcagaagaa atctggctac
721 atccagcaaa gcatctcttg aactgcagaa tggaaagaag gctgcaaaag cagaagagat
781 caagagagct ccattcataa agataaacat ggatggtgtc cctattggta gaaagatcga
841 tctgaatgct tttgatagct atgagaagct ttctttagcg gttgacaagc tattccgagg
901 ccttcttgca gcccaaagag accccctcac tgctggagca aaggactgcc agcaggaaga
961 tgtggcaata tctggcttgc tagatggaac tggggagtac actttggttt atgaggatta
1021 tgaaggcgac aaggtgcttg ttggagatgt gccatggggg atgtttgttt cttcagttaa
1081 gagactgaga gtactgaaga catctgacct ctcttcatct ctaataacct ctggacggaa
1141 aagaacagct gctgagtgtt gaccttcttt tttggagctg ctttgacaca ttcagtgacc
1201 tgctgtgaag aagaatatga tcttctgagc ttgtatcatc gtctctttct ctcaatgtct
1261 tgctgtgctg atcttttggg gttttcctgt tcctacttaa ccaacttgct tccttctgtt
1321 taagacactt gtgtgaagtg agtgcaattt gacatgacca tcatgtaaat gttcagctaa
1381 atgctctaca tttatgcagt ttattctc
//