LOCUS AK121852 1826 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033101N14, full insert
sequence.
ACCESSION AK121852
VERSION AK121852.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1826)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1826
/clone="J033101N14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 86..1507
/db_xref="Osa1:LOC_Os11g01869"
/note="(Rice Genome Annotation Project) RBP2 protein,
putative, expressed"
/note="mapping to R11-TIGRv4S1-000022R (Chr.11: short
arm=456202, long arm=460680, direction=reverse) for TIGR
Pseudomol ver4"
/protein_id="BAH00690.1"
/translation="MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQK
AGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVK
SIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQY
IGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETPK
PLKIKKGGFKKKWNKRKFMKKDGQAVVEKDEARVAGDAHDSDVLMQPTVITQEASCGT
LFLQPCEEAKRVEAEPPRDIEMVQPDKENQHSDAALVQPDDEARVEQEPSRDISVVPP
NEEAISVKQEPSIDAAILQPKEEASSVKQEPFIDTAMLQACKEAGSVELGPARDTVIS
QLNEQDRGVKQEPAGDTAVPQPDVDARVVKEESPRTEPNGEATNMKETPKNSAVCNSP
ETKEFGDITAMGSDPPATNMSEE"
BASE COUNT 561 a 389 c 467 g 409 t
ORIGIN
1 gtttcgcacc acgcacacaa ccaaaaccct tctcttctct ctcgactctc gacgacgctg
61 cggcggcggt ggcggcgagg tgggaatgga catgccgccc acgccccttc cgccggagac
121 cgccaacacc tcgcccgctc ccaacggcgc caccgccgga atcagggttg agaactgcta
181 cgtcttcaag agccggctgc aagagtatgc gcagaaagcc ggcctccaga ctccagagta
241 tcataccttc aaggagggac cttcccatga gcctgtcttc aagtccacag tggtgattaa
301 taacaccagc tatgactccc tgcccggatt cttcaacaga aaggctgcag aacagtctgc
361 tgctgaagtt gccctcatgg aaattgtcaa gtccatacca gccaacgcaa acatcccagc
421 tgttcaagag actgggctgt gcaagaatct tcttcaggag tatgcacaga agatgaatta
481 tgccattcca tcttatattt gcaccaaatc agcctcaggc ttagctcctt tcatatgcac
541 tgtagagatt ggtggaatac aatatattgg tgctgcagcc agaacaaaga aagatgcaga
601 gataaaagct gctcgaactg ctcttctggc aattcaaggt caatcagagg gttctgcaaa
661 tggtgcgaca aaatatattg tagttcctgg taaaagggta ggtaaggagg tagagaaaat
721 gccaattgaa acccccaaac cacttaaaat aaagaaaggt ggtttcaaga agaaatggaa
781 caagaggaaa ttcatgaaga aggatggtca agctgttgtg gaaaaggatg aagctagagt
841 ggctggagat gctcacgatt ctgacgtcct aatgcagcca acagtaataa cacaggaggc
901 atcttgtggc actctgttcc ttcaaccttg tgaggaagct aaaagagtag aagctgagcc
961 acctagagat attgaaatgg tacaacctga taaggagaac caacacagtg acgctgcatt
1021 ggtgcaacct gatgatgaag ctagagtaga acaggagcca tccagagata tttcagtggt
1081 gccacctaat gaggaagcta taagtgttaa gcaggaacca tccatcgatg ctgcaattct
1141 gcaacctaaa gaggaagctt caagtgtaaa gcaggagcca ttcatcgata ctgcaatgct
1201 gcaagcttgt aaggaagctg gaagtgtaga acttgggcca gccagagata ctgtaatttc
1261 tcaacttaat gagcaagata ggggtgtaaa gcaggagcca gctggtgaca ctgcagtgcc
1321 acaacctgac gtggacgcta gggtcgtaaa ggaggagtca ccaagaacgg aacctaatgg
1381 ggaagctacg aacatgaagg agacaccaaa gaactctgca gtgtgtaatt ctccagagac
1441 aaaggaattt ggagatatta cagcaatggg ttcagatcct cccgcaacta atatgagcga
1501 agaataagct gtggttgttg aatcaaaatg caatagcttt agtgtgttca cctgcagagg
1561 gcgaagaata agctgcggtt gttgaatcaa aatgcaatag ccttagtgtg ttcacctgca
1621 gaggtgtgaa acatgaatgg ctggcttttc cagtttaaaa agaggcagct ggaataggaa
1681 gatgtatgtg ggctgagaat agttagttca tatttgtcat tgttagctag gcatgtgtat
1741 gcctgatgat atgaatgaaa tgtattacct gctgctttag tgagcactac tttgaaaaga
1801 aggggaaaaa atgaattcga ggtttc
//