LOCUS AK121805 2260 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033097L05, full insert
sequence.
ACCESSION AK121805
VERSION AK121805.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2260)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2260
/clone="J033097L05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 624..1997
/db_xref="Osa1:LOC_Os03g56060"
/db_xref="RAP-DB:Os03g0770800"
/note="(RAP Annotation release2) CSLC9"
/note="(Rice Genome Annotation Project) CSLC9 - cellulose
synthase-like family C, expressed"
/note="mapping to R03-TIGRv4S1-001499R (Chr.3: short
arm=31869776, long arm=31873418, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00668.1"
/translation="MVLVQIPMCNEKEVYQQSIAAVCNLDWPRSNFLVQVLDDSDDPT
TQTLIREEVLKWQQNGARIVYRHRVLRDGYKAGNLKSAMSCSYVKDYEFVAIFDADFQ
PNPDFLKRTVPHFKDNDELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGIF
LNFFGFNGTAGVWRIKALDDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCEL
PESYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFLLRKLILPFYS
FTLFCIILPMTMFVPEAELPDWVVCYIPALMSLLNILPSPKSFPFIIPYLLFENTMSV
TKFNAMISGLFQLGNAYEWVVTKKSGRSSEGDLISLAPKELKHQKTESAPNLDAIAKE
QSAPRKDVKKKHNRIYKKELALSLLLLTAAARSLLSKQGIHFYFLLFQGISFLLVGLD
LIGEQIE"
BASE COUNT 520 a 565 c 607 g 568 t
ORIGIN
1 ggcttcttct tgagcttaaa tggcagtggg atcagctgcg taggtgtgag ggggagggat
61 tggcattgag gggtgggggg aggtggaggt ccaggaatag ggtgtgggtg aagtgtggga
121 ggctaatttg ggggtgagag aggagaagga gaggtgaggg gtggggggag gaggaggggg
181 aggctggttc ttggaccggc cattggatgg cgccgtggag cggcttatgg ggcgggaagt
241 tggccgccgc cggcgagagc cccgtgctcc gctcccgctt ctacgcgttc atcagggcat
301 tcgtcgtcct ctcggtgctc ctcctcatcg ttgagctcgg cgcctacatc aatggctggg
361 acgacctcgc cgcctccgcg ctcgccctcc ccgtcatcgg cgtcgagtcg ctctacgcgt
421 cgtggctgcg cttccgcgcc acctatgtcg cgccattcat ccagttcctc accgacgcat
481 gcgtcgtgct cttcctcatc cagagcgccg accgcctcat ccagtgcctc ggctgcttct
541 acatccatct caagcgcatc aagcctaacc ccaagtcacc ggcattgccc gacgccgaag
601 accccgacgc cgcgtactac cccatggtac tcgtgcagat accaatgtgc aacgagaagg
661 aggtttatca gcaatcaatt gcggccgtgt gcaatcttga ttggccgagg tccaacttct
721 tggttcaggt attggatgat tcggacgatc cgacgacgca gacactgatc agagaagagg
781 tgctcaagtg gcagcagaac ggcgctcgga ttgtgtaccg gcatcgtgtc cttagggatg
841 gttataaggc tggaaatctc aagtcggcga tgagctgcag ctatgtcaag gactatgagt
901 ttgttgccat ctttgatgcg gacttccaac cgaatccgga cttcttgaag cgaaccgtgc
961 cacatttcaa ggacaatgat gaattggggc tagtgcaagc aagatggtca tttgtgaata
1021 aggatgagaa cctattgact cgtctgcaaa acattaatct ttgcttccac tttgaggtag
1081 aacagcaagt gaatgggata ttcctaaact tcttcgggtt caatggcact gctggtgtgt
1141 ggagaatcaa ggcattggat gactcgggag ggtggatgga gcgtacaaca gtggaggaca
1201 tggacattgc agtccgggca caccttaggg gctggaaatt tatcttcctg aatgacgtcg
1261 agtgccaatg tgaattgcca gagtcatacg aagcttatag gaagcagcag catcggtggc
1321 attctggtcc aatgcagcta ttcagactct gcttaccaga cattatcaaa tgcaagattg
1381 tgttttggaa gaaagccaac ttgatcttcc ttttcttcct tctccggaag ctcatactac
1441 cattctactc tttcacgctc ttctgcatca tcctcccaat gacgatgttt gtgcctgaag
1501 ccgagcttcc tgactgggtc gtatgctaca ttcctgccct gatgtccttg ctcaacatcc
1561 tgccttctcc gaagtctttc cctttcatca tcccatacct acttttcgag aacaccatgt
1621 ccgtgacaaa attcaatgcc atgatctctg gtctgttcca gcttggaaat gcatacgagt
1681 gggtggtgac caagaagtca ggccgatcat cggagggcga cctcatttct ttggcaccca
1741 aagagttgaa acaccaaaaa actgaatcgg cgcctaacct cgacgctatt gcaaaggagc
1801 agtccgctcc tagaaaggac gtaaagaaga agcacaaccg gatatacaag aaagagcttg
1861 cactctcatt gctcctccta accgctgcag ctcgcagttt gctctcgaaa cagggtatac
1921 atttctactt cctcctgttc cagggcatat ctttcttgtt agtaggcctt gatctcatag
1981 gcgagcagat tgagtaaact gtgaaaagca tgatagatgt taaaaaaaca gtgacaatgg
2041 agggtgctcc agggatgttg tgtcgaagct ctttggcgat attgaaatgt tgcatgacgc
2101 aattgtgtcg tccaattgat ttatgtcacg acttcacaca acatgatcca caatgtacac
2161 gcccaaatag gcccctcccc cctcggttgt gtagatatag ttgttcttgg actgtaaatt
2221 tgcctagtta ttccaagact atccgattct tttgtaaacc
//