LOCUS AK121766 2482 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033092A16, full insert
sequence.
ACCESSION AK121766
VERSION AK121766.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2482)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2482
/clone="J033092A16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2482
/db_xref="Osa1:LOC_Os05g03620"
/db_xref="RAP-DB:Os05g0127300"
/note="(RAP Annotation release2) Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II domain
containing protein"
/note="(Rice Genome Annotation Project) protein kinase,
putative, expressed"
/note="mapping to R05-TIGRv4S1-000087F (Chr.5: short
arm=1525332, long arm=1528075, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 347 a 871 c 818 g 446 t
ORIGIN
1 gaatccgcgc cttcctctca caagtctcct cttcttctac gtactcctct ccttcccccg
61 cgcagccgta cacgactccc gatgagatga cggccaccgc cgccgtcgtc gccgcccgcc
121 tcatccaatg accccgctcc tcctcctcct cctcctcccc cttctcctcc tcgccccggc
181 ctccgcctcc accgtcgcca tcgccgccgg ccccaccgcc tgcgccgtcg cggagggaaa
241 cctccaccgt ctactgcgcc tccgccacca actcgtcctc ctccgccgcc gtcgcgccgt
301 tcgtcagctt ctcccaggtg tccggcggcg ggggggcgtt cgtctgcggg ctgcaggtcg
361 gggggcgcgc gctcttctgc tggcccgccg cggcgccggg tcagctcagg cgggtgtaca
421 acggcccggg ccagctgtca cagctcgccg tcgggggcgg ccatgtcgcg gcgtacgacg
481 ccgcggcgcg ggtgatacgg tggtggcgtg gcggggaccg gttccctctc tggttcggcg
541 gtgggttcgc ctccctcgtc tccggcgacg acttcacctg cgccgtggag acgagcacct
601 ccgccgtccg gtgctggggc ccgcgcggcg gcgccgtgga ggcgggtttt ctcaacgcct
661 ccgtctccgc cctcgccgcg ggaggttccc gcgcgtgcgg ggtgaggagg aacgacggcg
721 gcgtgctctg ctccggcggt ggcgtgctcg cgccgcgcga ggacctgtac gtggacggcc
781 tggccgtcgg cgactcccac gcgtgcggcc tcctccggcc gaaccacacc gccgcgtgct
841 ggagcctcgg gggcgccacc accacgctct actacccggc ggtcggcacg gcgttcgagc
901 tcctcgtcgc cggcggtaac ctcacgtgcg gcctcgtgtc ggccaacttc agcctgctct
961 gctggtcgag ggatgggttg gtggcggcgg aggtgaacct gccgccgatc ctccccggcg
1021 tctgcgtctc cgacaacagc tcgtgcaaat gcggcccgct cccggactcc gggaggttct
1081 gcaaggtctc cggcggcgcc gccgcagctg tcggcagtgg cgcgccgagc ccgtacgggt
1141 cgccgaacgg gtcgctcggc cgcctgcggc ggcagctgtc gcgcgtgatg acgcggcagc
1201 ggagcgggcc gtcgtcgttc aaggaccccg ccgaggagtt caccttcgcg cagctcgcgg
1261 cggcgaccaa ggacttcgcg gcggaggcca agatcgggga ggggagcttc gggacggtgt
1321 accgcggcaa gctccccgac gggcgggagg tggccatcaa gcgcggcgag tcggggccgc
1381 gcgcgcgcaa gttccaggag aaggagacgg cgttccggtc ggagctggcc ttcctctcgc
1441 ggctccacca caagcacctc gtcggcttcg tcggctactg cgaggagagc gacgagcggc
1501 tgctggtcta cgagtacatg aagaacggcg cgctctacga ccacctccac cccaagccca
1561 acggctcgtc ctcgccgtcc ccgtcgccgg tggccacgtc gtggaagctg cgcatcaaga
1621 tcctgctcga cgcgtcgcgc ggcatcgact acctccactc gtacgccgtg ccgccgatca
1681 tccaccgcga catcaagtcg tcgaacatcc tgctcgacgg cagctgggtg gcgcgcgtgt
1741 cggacttcgg gctgtcgctg atggggccgg agacggagga ggtgaagcac ctgtcgatga
1801 aggccgccgg gacggtgggg tacatggacc cggagtacta cggcctccac cacctcaccg
1861 tcaagagcga cgtctacggc ttcggcgtcg tcatgctcga ggcgctcacc gggaagcgcg
1921 ccatcttcaa ggaggccgag ggcgggagcc ccgtcagcgt ggtggactac gcagtcccca
1981 gcatcgtcgc cggcgagctc agcaaggtgc tcgacgcccg cgcgccggag ccgagcgcgc
2041 acgaggccga ggccgtcgag ctggtcgcct acacggcggt gcactgcgtc cggctggagg
2101 ggaaggaccg gccggcgatg gcggacatcg tggccaacct cgagacggcg gtggcgctct
2161 gcgaggacag cgccaccggc ggcggcgccg ccggccatgg caacagctcg tccagcgcca
2221 gcctctccat cacgtccatg gagttgagta ggatggattg attgagatta gtagcttccc
2281 taattcaaat ccagagtttc aaattgtgat tagccccgga aggagatttt aaaatttgtt
2341 gcttcacttc attttttttt agaggagaac atcatttgtg tgattctctc acacattttg
2401 ttcatggtgg ctgtacatga ttttgtattg aactgatttc tcttttcata gatgagaaaa
2461 tttctctctt tttttttcta ct
//