LOCUS AK121722 4828 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033081K15, full insert
sequence.
ACCESSION AK121722
VERSION AK121722.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4828)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4828
/clone="J033081K15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4828
/db_xref="Osa1:LOC_Os01g42410"
/note="(Rice Genome Annotation Project) PDR5-like ABC
transporter, putative, expressed"
/note="mapping to R01-TIGRv4S1-000961R (Chr.1: short
arm=24433932, long arm=24442136, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1220 a 1043 c 1282 g 1283 t
ORIGIN
1 gaaacttgta gcttagcctt gcaaggccaa gcaggcagag gcagaagagc acaactcccc
61 ccaaaggagg agtttgctcg atcgatcacc aagaacatcg agaggaagag gaagaggaag
121 caggatggat cgggaggtgc acaggatggc gagcctgagg agggaagggt cgatgtggag
181 gagcggcggc gacgtgttct cgcggtcgtc gtcgcggttc caggacgagg acgacgacga
241 ggaggcgctg cggtgggcgg cgctggagcg gctgccgacg tacgaccgcg tgcggcgggg
301 gatcctggcg gtgtcgtcgg aggacggcgg cgccggcggg gagaaggtgg aggtggacgt
361 ggggaggctg ggggcgaggg agagcagggc gctgatcgag cggctggtcc gcgccgccga
421 cgacgaccac gagcggttcc tcctcaagct ccgggagcgg atggaccgcg tggggatcga
481 ctaccccacc atcgaggtgc ggttcgagaa cctcgaggtg gaggccgacg tccacgtcgg
541 caaccgcggc ctccccaccc tcctcaactc cgtcaccaac accgtcgagg caatcgggaa
601 cgcgctccac atcctcccca acaagaagca gccgatgacc gtcctccatg acgtcagcgg
661 gatcatcaag ccccggagga tgaccttgct gctgggacct cctggctcgg gcaagaccac
721 gttgctcctg gcgttggcag ggaagctcga caaggacctc aaggtctcgg ggaaggtgac
781 ctacaatgga cacgggatgc acgagttcgt cccggaaagg accgcggcgt acatcagcca
841 gcatgatctc cacatcgggg agatgaccgt gagggagaca ttggccttct cggcgcggtg
901 ccaaggcgtt ggcactagat atgaaatgct gactgagttg gcaagaaggg aaaaggcagc
961 aaacatcaag ccagatcatg atattgatat ctacatgaag gcctcagcta tgggaggaca
1021 agaatctagt gttgttacgg actacatatt gaagatatta ggattggata tttgtgctga
1081 tacggtagta ggaaatgaga tgttaagggg tatatctggt ggacaacgga agcgtgtcac
1141 aacaggtatg actaacagtc tttagcaaga tgggggttgt tctttaaaga aaaactctaa
1201 ctgtcctata tgttcacagg tgaaatgctt gttggtccag caagagcttt gttcatggat
1261 gagatatcca ctggactgga cagctcaacc acgtaccaga tcgtgaattc ccttaggcag
1321 actatccaca tccttggcgg aactgctgtc atctcattgc tccagccagc acctgaaaca
1381 tacaacttgt ttgatgacat tatactcctc tctgacgggc aggttgtgta ccagggtccc
1441 cgtgaacatg tgcttgagtt ctttgagttc atgggcttca gatgccctgc cagaaagggt
1501 gttgctgatt tcttgcagga ggtgacatca aggaaagatc aggggcagta ctggtgtagg
1561 cgtgacagac cataccgttt tgtgccagtg aagcaattcg cagatgcgtt ccgttccttc
1621 catgtgggcc gatccataca gaatgagctt tctgagccat ttgataggac caggagccac
1681 cctgctgctc tggctacttc aaagtatggt gtcagcagga aggagttgct caaagccact
1741 atcgatagag agcttcttct catgaagagg aatgcattta tgtacatttt taaagctgtt
1801 aatctaactc taatggcatt gatcgtgatg accacatttt tccgtaccag catgcgacat
1861 gatagagatt atggaatgat ctatctgggg gcattgtact ttgctcttga cacagtcatg
1921 tttaatggtt tcgcagagct tgccatgact gtcatgaaac tacctgtttt cttcaagcaa
1981 agggatcttc tcttctttcc tgcatgggcc tacaccatac catcatggat tcttcagatt
2041 cctatcacat ttctcgaagt tggtgtttat gttttcataa catactatgt cattggattt
2101 gatcccagtg taagcaggtt cttcaagcag tatctgctgc tacttgcact caaccagatg
2161 tcatctgcac tattccgctt cattgctgga atcggaagag acatggttgt gtctcacaca
2221 tttggaccct tatcactgtt ggcttttgca gcattgggtg gctttatcct tgcaagacct
2281 gacgtgaaga aatggtggat ttggggttac tggatatccc cgctatcgta tgcacaaaat
2341 gctatttcga caaatgaatt tttgggtcac agttggagcc aaatacttcc tggagaaaat
2401 gtgaccttgg gagttagtgt actaaaatct cgtggtatct ttactgaagc taagtggtac
2461 tggattggac ttggtgcttt gcttggatac actctcctct ttaacctgct ctacactgta
2521 gctctttcag ttttgagtcc attcactgac tctcatgcat caatgtctga ggacgcattg
2581 aaagagaagc atgccaactt aaccggtgaa gttgtagagg gacagaagga cactaaatct
2641 aggaagcagg aattggaatt gtcccatatt gctgaccaaa actctggaat taacagcgct
2701 gattctagcg caagcaggaa gggaatggtg ctcccatttg caccactatc tattagtttt
2761 aacgacgtaa gatactcagt ggacatgcca gaggcaatga aagcacaagg cataacagaa
2821 gaccgtttgt tgcttctaaa gggtgttagt ggttctttca ggccaggtgt acttactgca
2881 ttgatgggtg taagtggtgc cgggaagaca acactgatgg atgttttagc agggagaaaa
2941 actggaggat acatagaggg agatattaga atatctggct atccaaagaa gcaagagacc
3001 tttgcacgta tatcaggata ttgtgagcaa aatgacatcc attctcccca tgtgacagta
3061 tatgaatcac ttgtgttctc tgcatggctg cggctaccct cggaggttga ttcagaagca
3121 agaaagatgt ttattgagag gtcatggatc ttgtagagct cacatctctg aggggagcac
3181 ttgttgggct tcctggagtg agcggcctgt caactgagca acgcaagaga cttactattg
3241 ctgtggagct tgttgcaaac ccttcaatta tttttatgga tgagccaaca tctggtcttg
3301 atgctcgggc agctgcgatt gtgatgagga ccgtaaggaa caccgttaac actggcagga
3361 ctgttgtttg taccattcac cagccaagta ttgacatctt tgaagcattt gatgagcttt
3421 tcctaatgaa gagaggaggt gaagagatat atgttggtcc agtgggccag aattcctcaa
3481 aactgattga gtactttgag ggaattgatg gcgttagtag gataaaagat ggatataatc
3541 cagcaacatg gatgttggaa gtgacctctt cagcccagga ggagatgctc ggtgttgatt
3601 ttagtgaaat ctacaggcag tcagagctat atcaaaggaa caaggaactt attgaggagc
3661 taagcacacc acctcctggc tctactgatc tcaacttccc tacgcagtac tctagatcgt
3721 tcattacaca gtgcctagct tgcttgtgga agcagaattg gtcatattgg aggaatccat
3781 cctacactgc agtgagatta ctcttcacta tcgtcattgc cctaatgttt ggaacaatgt
3841 tctggaacct tggaacgaga actaaaaaac aacaggatct attcaatgcc atgggatcaa
3901 tgtatgctgc agttctctac attggagtgc aaaactctgg ttctgttcaa ccagtggtgg
3961 tggtggagcg aacagtcttt taccgagaaa gagcagctgg catgtattca gctttcccgt
4021 atgcatttgg acaggttgca attgagttac catacatcat ggttcagact ctgatatatg
4081 gcgtgctggt atactcaatg attggatttg agtggactgt tgccaagttc ttgtggtact
4141 tgttcttcat gtacttcaca ctgctatatt tcacatttta cggaatgatg gcggtagggt
4201 tgacaccaaa tgagagcata gcagcaatca tctcgtccgc tttctacaat gtgtggaacc
4261 tcttctcagg atatctgatc cctcgaccga aaatccctgt ttggtggagg tggtactgtt
4321 ggatttgccc ggttgcatgg actttgtatg gattagttgc ttcccagttt ggtgatatcc
4381 aacatgtgct cgaaggcgac accagaactg ttgcacagtt tgtcactgat tactttggct
4441 tccatcataa cttcctgtgg gtggtggccg tggtgcacgt cgtcttcgcc gtgaccttcg
4501 ccttcctctt cagttttgcg atcatgaagt tcaacttcca gaggagatga gaaagtgatc
4561 attctttttt gcattcgttc tattgtacta ctgaatagct attagctatc ctgtaaatgg
4621 tatagagatc atcttctagt atttcattat ttcaagcatg taaaaattcg gacatctagt
4681 aggattctct aggaaaaaga acccttgttg agcttcctgc ctcttgacca gctctagctg
4741 ataaatgtcg gatgcagatg aatgtaaagt atggccttca atgttttcat ttttgtcgaa
4801 ttaatgaaag cagaaaattt gttgatcc
//