LOCUS AK121717 2006 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033079L01, full insert sequence. ACCESSION AK121717 VERSION AK121717.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2006) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2006 /clone="J033079L01" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2006 /db_xref="Osa1:LOC_Os05g48380" /db_xref="RAP-DB:Os05g0557600" /note="(RAP Annotation release2) Ubiquitin-conjugating enzyme, E2 domain containing protein" /note="(Rice Genome Annotation Project) ubiquitin-conjugating enzyme E2, putative, expressed" /note="mapping to R05-TIGRv4S1-001043R (Chr.5: short arm=27650624, long arm=27655048, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 523 a 434 c 507 g 542 t ORIGIN 1 gacccaaacc ctccctttcc tcccccaatt ctccatttct cctagctcgc cggaaaccct 61 aagcgggcca cctcgcgccg cggcgggccg gcgagcgatc gcattgggcg gcggcggcga 121 tggcgaccca cgcccccaag ggctacctct gcgcggggag ctcgtcgttc gatgatcccg 181 acgtggtcga ggtgacgccg gcggcggccg cggcaggggg gtggagctcc ggccaccaga 241 agcggaagcg gagtcaggtt gttcctcatg aagtaattga actggatgct gatgatgatc 301 ctgatggagt tgtgattatt ggtgaaaaat catcagttga taagaataag caagctgttg 361 gatatcctat agactggcta aagcatgcaa agagtagttt ggctggtgga attgctggcc 421 caagttccta cccatcaaaa aatcctgata tattacttgg tggcctgaaa atatttcaag 481 agaacccatt ttacaacaac attgatgact atgcttatga ggcatttgaa gaagattatg 541 gttatgatga agatgagtat gatgattacg attatgatag tacactttat gaaagtgaat 601 ataacttcac tttggcttcc aagtttgatg gtttggatat cccacctggt gtggaggctc 661 ctttaccatg gttgcagacg actgcgtcag agatggcaaa taagaccaaa cctgtgaaca 721 tgatggatga taaaattgat gaaaaataca gtgcatttaa gcaattcgat actgttgatg 781 atcacagtga tcattattat tcgaagccag atttaagaaa ggttcaggta gtgaaaaagc 841 cttcaaaaga atgggcaaag cgtattcagc acgagtggaa agttctagaa aaagatttac 901 cagataccat attcgtgagg gcatatgagg atagaatgga cctgcttaga gctgttatta 961 cgggaccagc aggcactccc tatcatgatg gtctcttctt ctttgacatt tacttccctc 1021 ctcattatcc gagtgtacct ccactggtga actatcggtc tggtgggttg cggcttaatc 1081 caaacttgta tgcttgcggg aaggtgtgcc ttagcctgtt gaacacctgg tctggtagtg 1141 gatgtgagag gtggagtcct tcaaactcaa caatgctaca agtcctggtc tcagttcagg 1201 ctttggtgtt gaatgccaaa ccttatttca atgagcctgg atatgccatg catgctaata 1261 cacctcatgg cgagaagagt tcattaactt ataatgaaga tactttcctg ctatcctgca 1321 ggacaatgct atattctctg cgaaatccac caaagcattt tgaggatttt atcgccggtc 1381 atttccgcaa gtatggccag agcatcctga tagcttgcag agcctatctg gacggtgccc 1441 aagttggatg tcttgttgga aatggtgtgc aggatgtcga tgagggcgac aagagctgct 1501 cggcgaggtt taagagcgcg ctgaagagat tatttgagga acttctgatg gaattcactg 1561 tcaagggagc agagtgtgac aaattcctag ctgagaaggc caaagccgcg gcttctagag 1621 ctccagcaga caccacattg aggctataag ttgatagcct cgcgtggtcg atagacggga 1681 gtaataattt cgctattgaa ataggatcct caactcatta tgcccccgga ttctaaccgt 1741 ttcctggaag tagcctatgt aaatagcctt gtagttgccc cggtaaacat aaacgacata 1801 tccgtgtttg tatttagggg ctatatatct tttttcccca tagcatgagg gtgtcgtcta 1861 cctgcggagc cttaatccgc tgtgtatgtg attgacgcca caccatcttg gccttctgaa 1921 gaatatcata ttgaactctt atcagcagat ccctgcttct acgctggaat tcagctagaa 1981 tgctagatta tcagttggtt tgtgcc //