LOCUS       AK121717                2006 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J033079L01, full insert
            sequence.
ACCESSION   AK121717
VERSION     AK121717.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Collection, mapping, and annotation of 28K full-length cDNA clones
            from japonica rice
  JOURNAL   Unpublished (2003)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2006
                     /clone="J033079L01"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..2006
                     /db_xref="Osa1:LOC_Os05g48380"
                     /db_xref="RAP-DB:Os05g0557600"
                     /note="(RAP Annotation release2) Ubiquitin-conjugating
                     enzyme, E2 domain containing protein"
                     /note="(Rice Genome Annotation Project)
                     ubiquitin-conjugating enzyme E2, putative, expressed"
                     /note="mapping to R05-TIGRv4S1-001043R (Chr.5: short
                     arm=27650624, long arm=27655048, direction=reverse) for
                     TIGR Pseudomol ver4"
BASE COUNT          523 a          434 c          507 g          542 t
ORIGIN      
        1 gacccaaacc ctccctttcc tcccccaatt ctccatttct cctagctcgc cggaaaccct
       61 aagcgggcca cctcgcgccg cggcgggccg gcgagcgatc gcattgggcg gcggcggcga
      121 tggcgaccca cgcccccaag ggctacctct gcgcggggag ctcgtcgttc gatgatcccg
      181 acgtggtcga ggtgacgccg gcggcggccg cggcaggggg gtggagctcc ggccaccaga
      241 agcggaagcg gagtcaggtt gttcctcatg aagtaattga actggatgct gatgatgatc
      301 ctgatggagt tgtgattatt ggtgaaaaat catcagttga taagaataag caagctgttg
      361 gatatcctat agactggcta aagcatgcaa agagtagttt ggctggtgga attgctggcc
      421 caagttccta cccatcaaaa aatcctgata tattacttgg tggcctgaaa atatttcaag
      481 agaacccatt ttacaacaac attgatgact atgcttatga ggcatttgaa gaagattatg
      541 gttatgatga agatgagtat gatgattacg attatgatag tacactttat gaaagtgaat
      601 ataacttcac tttggcttcc aagtttgatg gtttggatat cccacctggt gtggaggctc
      661 ctttaccatg gttgcagacg actgcgtcag agatggcaaa taagaccaaa cctgtgaaca
      721 tgatggatga taaaattgat gaaaaataca gtgcatttaa gcaattcgat actgttgatg
      781 atcacagtga tcattattat tcgaagccag atttaagaaa ggttcaggta gtgaaaaagc
      841 cttcaaaaga atgggcaaag cgtattcagc acgagtggaa agttctagaa aaagatttac
      901 cagataccat attcgtgagg gcatatgagg atagaatgga cctgcttaga gctgttatta
      961 cgggaccagc aggcactccc tatcatgatg gtctcttctt ctttgacatt tacttccctc
     1021 ctcattatcc gagtgtacct ccactggtga actatcggtc tggtgggttg cggcttaatc
     1081 caaacttgta tgcttgcggg aaggtgtgcc ttagcctgtt gaacacctgg tctggtagtg
     1141 gatgtgagag gtggagtcct tcaaactcaa caatgctaca agtcctggtc tcagttcagg
     1201 ctttggtgtt gaatgccaaa ccttatttca atgagcctgg atatgccatg catgctaata
     1261 cacctcatgg cgagaagagt tcattaactt ataatgaaga tactttcctg ctatcctgca
     1321 ggacaatgct atattctctg cgaaatccac caaagcattt tgaggatttt atcgccggtc
     1381 atttccgcaa gtatggccag agcatcctga tagcttgcag agcctatctg gacggtgccc
     1441 aagttggatg tcttgttgga aatggtgtgc aggatgtcga tgagggcgac aagagctgct
     1501 cggcgaggtt taagagcgcg ctgaagagat tatttgagga acttctgatg gaattcactg
     1561 tcaagggagc agagtgtgac aaattcctag ctgagaaggc caaagccgcg gcttctagag
     1621 ctccagcaga caccacattg aggctataag ttgatagcct cgcgtggtcg atagacggga
     1681 gtaataattt cgctattgaa ataggatcct caactcatta tgcccccgga ttctaaccgt
     1741 ttcctggaag tagcctatgt aaatagcctt gtagttgccc cggtaaacat aaacgacata
     1801 tccgtgtttg tatttagggg ctatatatct tttttcccca tagcatgagg gtgtcgtcta
     1861 cctgcggagc cttaatccgc tgtgtatgtg attgacgcca caccatcttg gccttctgaa
     1921 gaatatcata ttgaactctt atcagcagat ccctgcttct acgctggaat tcagctagaa
     1981 tgctagatta tcagttggtt tgtgcc
//