LOCUS AK121645 1649 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033058C09, full insert
sequence.
ACCESSION AK121645
VERSION AK121645.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1649)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1649
/clone="J033058C09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 98..1558
/db_xref="Osa1:LOC_Os02g50100"
/db_xref="RAP-DB:Os02g0733800"
/note="(RAP Annotation release2) Nuclear protein SET
domain containing protein"
/note="(Rice Genome Annotation Project) SET domain
containing protein, expressed"
/note="mapping to R02-TIGRv4S1-001308F (Chr.2: short
arm=30587624, long arm=30590276, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH00588.1"
/translation="MAAAAAAGATPATARKALLTTTATLLSSSLARSRRSLSCSAAAA
SAAPRIAPQPPDLLRWVQREGGFVHPALRVVDHPEHGLGVSAAAAEGDIPPGDVLIAL
PGRLPLRLRRPAGAADAVLVQLADQVPEELWAMRLGLRLLQERAKSDSFWWPYIANLP
ETFTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLEFEKEVKHKLGTVPLEDHPFCGQD
VNSSSLGWAMSAASTRAFRLHGEIPMLLPLIDMCNHSFNPNARIVQEGNVDSPDMSVK
VVAETKIDQNAAVTLNYGCYPNDFFLLDYGFVITSNSYDQVELSYDGTLLDAASMAAG
VSSPNFSAPAKWQQDILSQLNLYGEGAILKVSIGGPEIVDGRLLAALRVIIAADPDAV
SGHDLKTLMSLKEKAPLGPAVEASALRTVLALCTFALQHFHTKIMEDEAILKGEPPLT
TELAVQFRLQKKLLLLDVIQNLSRRIKMLALDKSTV"
BASE COUNT 377 a 467 c 401 g 404 t
ORIGIN
1 gatccgagag cccgtcgtct cttccaggct tcaagccatc tccaccccca accaacccca
61 ctgctctgct cttcgcgcgc ctccaccgcc gaaccccatg gccgccgccg ccgccgcggg
121 ggcgacgccg gcgacggcga ggaaggccct gctcacaaca accgccaccc tcctctcctc
181 ctcgctcgcg cgcagccggc gcagcctctc ctgctccgcg gccgctgcct ccgccgcccc
241 gcgcatcgcg cctcagccgc cggacctgct ccgatgggtg cagcgggagg gagggttcgt
301 gcaccccgcc ctccgcgtgg tcgaccatcc tgagcacggc ctcggggtct ccgccgccgc
361 ggccgaggga gacattcccc ctggcgacgt cctcatcgcg ctacccggcc gcctccctct
421 acgactccgc cgccccgccg gcgctgcgga cgcggtcctc gtgcagctag cggaccaagt
481 acctgaggaa ctatgggcta tgcgactggg cttgaggctg cttcaagaaa gggcaaaatc
541 tgattctttc tggtggccat atatcgcaaa tctgccagag acttttactg taccgatatt
601 ttttccaggg gaagacataa aaaacttgca gtatgcccct cttctccacc aggtgaataa
661 aaggtgtcgc ttccttctcg agtttgaaaa agaagtgaaa cataagcttg gtacagtgcc
721 cttggaagat catccttttt gtggacaaga tgtaaactca tcttcccttg gatgggctat
781 gtcagcagca tctactcggg cattccgttt gcatggtgaa atcccaatgc tgttgcctct
841 tattgatatg tgtaaccata gttttaaccc aaatgctagg attgtccagg aaggaaatgt
901 ggatagccct gatatgtcag ttaaggttgt tgctgagaca aaaattgatc aaaatgctgc
961 ggtaacactg aactatggtt gctaccctaa tgatttcttc cttcttgatt atggatttgt
1021 aataacatca aattcgtatg atcaagtgga actgagctat gatggaactc tcctagatgc
1081 tgctagcatg gcagcaggag tttcttcgcc taacttttca gctccagcca agtggcaaca
1141 ggatatcttg tcacagctaa atctgtatgg agagggtgct attctaaagg tcagcatagg
1201 aggtccagaa atagtagatg ggcgcttatt ggctgcttta agggttatta ttgcagctga
1261 tccggacgct gtgagtggcc atgacctcaa gactttgatg tctcttaagg agaaagctcc
1321 attaggccca gctgttgaag cttcagcact ccgaactgtc cttgcacttt gcacctttgc
1381 tctacaacac ttccacacga agataatgga agacgaggcc atactaaaag gagaaccacc
1441 tcttactact gaactagccg tgcagtttag attgcagaag aagctgcttc tcctggatgt
1501 gatacagaat cttagtcgca gaatcaagat gctagctcta gacaaatcca ccgtgtagga
1561 tttttcacgt tttggaattg ctttctcgga caatcaatta ccctattgta ctgattctgg
1621 agatgacaat aaagccccaa attttgtcc
//