LOCUS AK121623 1884 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033045G07, full insert sequence. ACCESSION AK121623 VERSION AK121623.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1884) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1884 /clone="J033045G07" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1884 /db_xref="Osa1:LOC_Os05g04340" /db_xref="RAP-DB:Os05g0134000" /note="(RAP Annotation release2) Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1)" /note="(Rice Genome Annotation Project) glycogen synthase kinase-3 homolog MsK-1, putative, expressed" /note="mapping to R05-TIGRv4S1-000101R (Chr.5: short arm=1952051, long arm=1955855, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 505 a 446 c 446 g 487 t ORIGIN 1 gctccgaatc ctcccccgca ttccgcgccg gagctgagga gggacagcga gccagcgagg 61 gaggtggggc aatccagcga gcgccagatc gtgccgccag ccccgctccg tcctctctcc 121 ggcgaccctc cgccccgcct gatcccgtgg tggatcaact acaactcatc tttaggaaag 181 cctcttgaac attagccttg tgtgcctttc aacagtatgg cctcggtagg tgtggtgcgt 241 tcttccttgg ggtttcagaa cgaaacaagt acaagtggcg atgccgaccg gcttccgaat 301 gagatgagca atatgagtat aagggatgat aataaggaca ttgacgacat agttgtcaat 361 ggcaatggga cagaacctgg tcatgttatt gtgacaagca ttgatggaag aaatggacag 421 gctaaacaga ccattagcta catggccgag cgtgtcgtag gtcatggatc ctttggaact 481 gttttccagg ccaagtgcct ggaaaccggt gagactgtgg ctataaagaa ggttcttcaa 541 gacaagagat ataagaaccg tgagctgcaa acaatgcgag ttcttgacca cccaaatgtg 601 gtgtcactaa agcattgttt tttctcaaag actgagaagg aggagcttta cctcaatttg 661 gtgcttgagt atgtgccaga gactgctcac cgtgtaatta aacattacaa caagatgaac 721 caacgcatgc cattgatata tgcaaaacta tacatgtatc agatatgcag agctttggcg 781 tacattcaca acaccattgg cgtgtgtcac agggatatca agccacaaaa tcttctggtg 841 aacccacata ctcatcagct gaaattatgt gacttcggca gcgcgaaagt cttggtaaaa 901 ggagaaccaa atatttctta catctgttca aggtactaca gagctccaga gctcatattt 961 ggtgctactg aatacacaac agcgattgat gtttggtctg ccggttgtgt gcttgctgaa 1021 ctcctcctgg ggcagcctct attccctggc gacagtggcg ttgatcagct tgttgaaatc 1081 atcaaggttc tgggtacccc tacacgagag gagattaagt gcatgaaccc aaattacacc 1141 gagtttaaat ttccgcaaat caaagctcac ccatggcaca agatcttcca taaaagaatg 1201 cctgctgaag cagtcgatct cgtctccagg cttttgcagt attcaccata cctccggtcc 1261 actggcttcg gaagcattga tccatccctt cttcgatgaa ctccgtgatc caaacacccg 1321 cttaccgaac ggccgtttcc ttcctcctct cttcaacttc aagccccatg aactgaaggg 1381 tatgccaatg gaattcctgg tgaagcttat ccccgaacat gctcgaaagc aatgcgcgtt 1441 tgtaggatgg tgatttctga ggtcagcatg aaaactagtt cagaatttct tcaccgtcct 1501 ccattagaaa gcagagatga accctgtgtg cagccatttg ggaaagctgg tgcatatgga 1561 agtggaacta catttttttg tccgagattc tgacgccgcg tattcttttc ccccctccca 1621 ctttgctgct gccggtgtaa ccaaaaaatc atccacggtt ctgtaaagtt gatgaagaag 1681 agtgtaaaat caggttgaaa actgaattcg atcggtttgt caagattgta gcaacatgca 1741 aggaaggatg ttgcacactt tgtatggcaa tgttcgttcg gtccaaatat ttggacatgg 1801 atcgagaggc tattcattta attgtacttg ctgctacatg ttcttacata tcagtaatct 1861 tctgagaagc tcgtgaaaga aagc //