LOCUS AK121622 4278 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033045C16, full insert
sequence.
ACCESSION AK121622
VERSION AK121622.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4278)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4278
/clone="J033045C16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4278
/db_xref="Osa1:LOC_Os06g29310"
/note="(Rice Genome Annotation Project) cysteine-type
peptidase, putative, expressed"
/note="mapping to R06-TIGRv4S1-000651R (Chr.6: short
arm=16731928, long arm=16744610, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1201 a 782 c 971 g 1324 t
ORIGIN
1 ggtagggggt agagtagggg aatccgcgcc gcctcctgct cctggccgcc gtgaatgcta
61 tggccggcgg cgaggacggg gccgacggcg tcggagatga caccgagctt cgcaggttct
121 cagacgtgga gctgctggag aagtcgcggc gcattcaggg ggagctcagt gggggtatcg
181 agcgaaggct caaggaccgc ggggccaagt ttcgccgctt gctagacgcc atcgtccgcg
241 agattgatcg ccgtaaggca gcaacggatg atgacagatg cgcaagggta gttcaatcgg
301 gatgtgcaga atcatcagtt aaacaacaag cagtaaccat atcagatttt cggtcctcct
361 ttgggataga tgaagaggca ggcgttgatg tatctcattt ggaaacaagt gcatgcattg
421 gcgacccaaa aacttcaaca gataatgagg ggatcttgtg tgaagaggaa gattcctatg
481 ctgctgatga tggcaaggat aatggctaca gtaggatatg caaagatgcc cacacttcta
541 ggaaaaggaa tggagaattt tcacctacct tttcaatgcg attgcgatca agaaaggtta
601 gtatgtacat tttcctttcc aaacatcgtg acatggtata ctagtagtaa tttttatgtt
661 gaatactaaa gttctagtaa tacagttggc agaggtccac cacccctatt attgccagta
721 cataaattag ttgatttgtt ttttgactat ctgttatggt ggtcaataac atggaaagat
781 taattatatt ttctaactgg gaaaaaggaa atatttattt gcaatgatat tatcatcttc
841 tcgctcacta tcaaagaatg aaccttactg ccctaaaggc tcctcctttt aactgaattg
901 tgataaattt gtgaagttcc gtttgctgat gtgtggttga ttctgttatt accaagcttg
961 atgataaatt gttgattaga tgattgtaca cgctgtgttt tatcttcgtg tcaagtgaat
1021 tgttattttt catgcatgct cattgagttt tttatacttt gaccattttc gcattccttc
1081 atttcacaaa tacatgccat ttcagatgtt accatagttt ctaatctaca gctttgtgta
1141 ctaatttcag tagtaatatg ctggtaaaaa ctataagata tgttactaca aaatgtattc
1201 cttttgagaa tctattaata ttatttccat ataaactgat tagatacctt tttttgttat
1261 aacattggtg ctgatttcta gtatgcaact atgcattact aaaattggat ttatttgtaa
1321 tatgtgacat ttagaaggaa agacatagaa aaccggttat tttctaagta actacgatta
1381 gaataaggat tctgctccaa ttagaatcaa gatggaccct gtacaacatg gttctatggt
1441 aacaatagag tcctaggatt gtactattaa aagccttttt ttgaaccttg tggcaacaag
1501 gggttcgggg gattatgtaa acaaaaaggc aggaggggtg gtcgaacaga gacgaaagtc
1561 ggccatagtg atccgggagt cccgtgtgga agggctctcg ctcaacggat caaaggtacg
1621 ccggggataa caggctgatg actcccaaga gctcttatcg acggagttgt ttggcacctc
1681 gatgtcgact catcacatcc tggggttgaa gaaggtccca agggttcggt ctcttagttg
1741 aggagtggtg gcatgggatc tctaattctc ccccatgttc atgcatatgg ggcattttga
1801 gtttgttctg tggtgtgaac gtttttttgc tcttattttt cttaacaaac aacaaaattt
1861 tctgggtttt taaatcttgc acatattgac tttgctgctt ataaaggcat taatgtttta
1921 tagtttataa atatctttcc accaattgtt acacccaaac catgatggat tccaattcca
1981 tagctatact gttagtagag atataaaagg tgtgctgaat gtttcatttg tgatgttatt
2041 tgtctctgaa ctttacactg tctaatatct ggttaaatat tcgtaaattg tattcttatc
2101 tgatctaatt ataactatcc taattcatat ttatatccaa ctcctgatat gtaaaaatga
2161 tataatatgg taagatcacc tttgatcttg ttttcatccc tacggttaga acataagaca
2221 actattgagt atatttgtct acgcatcgaa catgtgaatt gcgatttgct actgctgata
2281 aggggtatac ccacttcagc cgtctgcatt gaagatggca tgaaaatttc ttacatatca
2341 aaatatccaa aattttatgg catattggta ttagtaacat gagtacataa tgcttttgta
2401 caatttaaaa tgaaacttca ggtcggcaga tatacccatt aaaaacatat tttgtgaacc
2461 cagtatgact aatagatggg aagttttgat ttttgatgca tatttcatcc cttcattgtg
2521 atttatatgg gaatgtgggg gtggggggtt gtttttttat ggactgtacc aggaaaatag
2581 aaaaaacctg ggcagctttt gattcttcgg tagtttatga tcagttttca gttccctgtc
2641 ccatacagta attgcaacga tccacagaat gaaagtgaaa ttaatttgcc tcttgttggg
2701 ttattgataa actgcacagt acctgttatt atagatgtac tcatcacagc ttctagaact
2761 atctatgcta gttagtttgc tttaggttac tctttttaca aagcttattc tgatatttct
2821 attcaggtgg ttgaagaggt ggttctactc gatggagata cttgcatttc agactctgca
2881 gaaaaaacat cctctgcatg tgatgcaatg aagatacact atccttcatg ggacacccct
2941 aattctattg agctttctta ttctgacatg aagtgtcttg agcctgaatc attgttgtcc
3001 tcacctatac tgaacttcta cattatgtac ctaatgggac aaatgccatc gacaagtagg
3061 cttggaggtg gacaatgatg cttatttctt gaatctgaga agatggtgga aaggtgtaga
3121 tatatttaaa aaggcataca taataattcc tgtgcatgca gacgcacact ggagcttggt
3181 cattatatgt atgcctgcaa aggaagacca atcagggccc accatatttc atttggattc
3241 actgaagttt catagcagca gatttatttt cagcaccgtt gagagattcc ttaaagaaga
3301 atggaactac ctgaataaaa ctggttcttt agaagattgt catctacatg aatcagtgtg
3361 gaagaacctt cctcggaaaa ttaagaagaa agcagttaca gttccacagc aggacaatga
3421 atacgattgt ggtgtctttg ttctgtacta tatgcgacgc tttatcgagg aagcacctga
3481 aaggcttaac aacaaggact catctaatat gtttggcgaa gggtggttcc aacgtgaaga
3541 ggcttctgca ctgcgaaagg aaatgcaagc tctgcttctt cggttgtttg aggaagctaa
3601 agacaacaac cacatgagag atccaacaac accagtgtca gcaacagcgg agcaccctgt
3661 tgaagtcttg tcaaccgagc cagcagtacc agaccaccct cggaatgcgg ttggcgtcgc
3721 cacctcatag tttgcaggcg gctgccatgg gagctggcct tggaatgtgg aaggttggtg
3781 tgcatccgga aaacatagct ctcaattgtc ttctccggtt atgccacaag agaaggaaac
3841 ttggaaggta ctgtactggg tactatggta ggtaggtctg caaagatgcg atactgccgt
3901 gtatagttta ggtagaaagc cgggttatcc gctgggctct tggggataat tttggttctt
3961 ggttagttct taggctgggc tacaagagaa tggtcgaatt tgacaaactg ctcctacaag
4021 ctctgagctg ccaagttgac agctgcagga tctgcttgta aacccatgag gaaggggaga
4081 atcatcagaa tagctctcac ctgcctgccc aaatttctgc ttgtaaagca ttctgaattg
4141 aagttctgat gggtatagcc gtcggtggag tggaggcaca acttttggag ttggatactg
4201 tcatcgctct taaaaccatg cttttgggga cacttgtaca tttggtgcta gtaaaagtca
4261 ggcggcatca cggagttc
//