LOCUS AK121574 1809 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033036C16, full insert
sequence.
ACCESSION AK121574
VERSION AK121574.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1809)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1809
/clone="J033036C16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 74..1417
/db_xref="Osa1:LOC_Os02g07060"
/db_xref="RAP-DB:Os02g0167300"
/note="(RAP Annotation release2) Tubulin beta-3 chain
(Beta-3 tubulin)"
/note="(Rice Genome Annotation Project) tubulin beta-5
chain, putative, expressed"
/note="mapping to R02-TIGRv4S1-000238F (Chr.2: short
arm=3619836, long arm=3622859, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH00558.1"
/translation="MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL
ERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWA
KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP
DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLA
TPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR
GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQ
NKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK
AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEEEDYGDEEEDEVAA"
BASE COUNT 381 a 521 c 489 g 418 t
ORIGIN
1 ggcttcccac cccccaaatc ctcctccctc cctcccctaa acctcgccgg aatccaaccc
61 ctccgccgcc gccatgaggg agatcctgca catccagggg gggcaatgcg ggaaccagat
121 cggggccaag ttctgggagg tgatctgcga cgagcacggg atcgaccaca ccggcaagta
181 ctcgggcgac tccgacctcc agctcgagcg gatcaacgtc tactacaacg aggccagcgg
241 cggcaggttc gttccgcgcg ccgtgctcat ggacctcgag ccgggcacca tggactcggt
301 gcgctccggt cccttcggcc agatcttccg ccccgacaac ttcgtcttcg gccagtccgg
361 cgccggcaac aactgggcca aggggcacta caccgagggc gccgagctca tcgactccgt
421 cctcgacgtc gtccgcaagg aggccgagaa ctgcgactgc ctccaaggat ttcaagtctg
481 ccactctcta ggaggaggaa ctggttctgg tatgggtacc ctgctcatct caaagatcag
541 ggaggagtac ccggacagga tgatgttgac attctcagtt ttcccctcac caaaggtttc
601 tgataccgtg gtggaacctt acaatgccac actatctgtc catcagcttg ttgagaatgc
661 cgatgagtgc atggtacttg acaatgaagc tctatatgac atctgcttcc gcactctgaa
721 gctcgccaca cccacttttg gtgatctgaa ccatcttatt tctgcaacca tgagtggtgt
781 tacatgctgc ctgcgcttcc cgggacagct gaactctgac ctccgcaagc tggcggttaa
841 cttgatcccc ttccctcgtc tccatttctt catggtcggc tttgcaccgc tgacctcgag
901 gggatcccag cagtaccgcg ccctcactgt cccggagctg acccagcaga tgtgggacgc
961 caagaacatg atgtgcgccg ccgaccccag gcacggacgc tacctcacgg cgtcagccat
1021 gttccgcggg aagatgagca ccaaggaggt ggacgagcag atgctcaacg tccagaacaa
1081 gaactcgtcc tacttcgtgg agtggatccc gaacaacgtg aagtcgagcg tgtgcgacat
1141 ccctcccaac ggcctgaaga tggcgtccac cttcatcggc aactcgacgt cgatccagga
1201 gatgttccgc cgcgtgagcg agcagttcac ggccatgttc aggaggaagg ccttcttgca
1261 ctggtacacc ggggagggga tggacgagat ggagttcacc gaggccgaga gcaacatgaa
1321 cgacctggtg gccgagtacc agcagtacca ggacgcgaca gccgacgacg aggaagagga
1381 ctacggcgac gaggaggaag acgaggttgc tgcctaagcc acctacctgc ctgccattcc
1441 tctcgctctc gtcatccatc gtagatgatg attgaggatg tgctcccttg tgttattatt
1501 acctagtact gtattgcaac tgtcgatctg ggtcgtaaga tgtttatttt aggtgatttg
1561 atgctctagt tactcttttt tttccttgtg ttgattaatg gtgtgttgtc gatgcgaatt
1621 gtgatactag ctttaactgt ggacttaaat tactagatcc tggaattgat actgtttgcc
1681 agtaatatcg tgtgttgcgt gatcattatt ttttccacta cgaatacact gcgatgtcat
1741 tagtgggcgt gtgctaggat gtaaacgtgg atgcagttgt tctaagcctc cgtggtttgc
1801 ttgttatct
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