LOCUS AK121554 1613 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033033G12, full insert
sequence.
ACCESSION AK121554
VERSION AK121554.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1613)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1613
/clone="J033033G12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1613
/db_xref="Osa1:LOC_Os01g27240"
/db_xref="RAP-DB:Os01g0370000"
/note="(RAP Annotation release2) Similar to
Oxo-phytodienoic acid reductase"
/note="(Rice Genome Annotation Project) oxidoreductase,
FAD/FMN-binding family protein, expressed"
/note="mapping to R01-TIGRv4S1-000712R (Chr.1: short
arm=15519725, long arm=15522561, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 379 a 449 c 467 g 318 t
ORIGIN
1 gagtagcgag ccgaaatagc ctcgaaagga acagaggtgc gttatataga tcgggctgtc
61 aaaagcatac aaacacacat ggaggacact catctcctga caccctacaa gatgggccag
121 ctcaacctgg cacacaggat tgtacatgca ccggtatcaa ggttcagatc atatgggagc
181 atgccccagc cacacaatct cctctactac gcgcagaggg cgacgccggg cgccctcctc
241 attgcagagg ccagcgcagt ctcctacgct gcgttgggac gatccgagga cgacgctgcg
301 aacggtccaa tccaccgcca gcgtccaggt ccccctggct ttcttttcgg cacgaactta
361 acagactata attcagctac agatggtgtc aaagcaactg aatcaggggt aaatgaccgg
421 aataacctgt caaaatggtg gttcatgtca cgcctaaacg agagcgggaa tgctggtggt
481 gctgaagaaa gccactacac gcttccgtcg tccctagacg cgcctggact ttggaaccag
541 gagcaaatcg aggcctggcg gccgatcgtt gatgccgtgc acgccaaggg cgcactcttc
601 ttctgccaaa tctggcacaa cggtcgcgtg ttttcaacgg ataatccagt aacacctcaa
661 gtcagctatt ttggaaatac cgatgacctg gcaccggcgg cacgtcaaag gctggaaaca
721 ggggagatag tccagatcgt cgaggacttc cgtgtggccg ctagaaatgc catcaaagct
781 ggtttcgacg gcgtggagat ccatgcggcc aacgggcacc tgcttcacca gttcatgaag
841 gctagcgtaa acgaccgcac cgacgagtac ggcggcagcg tggagaaccg ctgccgcatc
901 accgtggatg ccatgtccgc cgtcgcagag gagatcggcg ccgaccgcgt cggcgtgcgc
961 ctctccccgt tcgcggacca ctgccgcgag gaaggcaccg acccggagga ggtcgcgctg
1021 cacctgatcg gcgtcatgaa cggcctcggc gtcctctact gccacgtgat cgagccgagg
1081 tgcatgcgtg agcagcatcg aggagcaccg cgcgcgccgc aacgtcccgc accgcctgct
1141 cccgttcaga agggcgttcc acggcacgtt cattgtgaac ggagggtacg accgggagga
1201 aggggacaag gcggtcggcg acggctacgc cgacctggtg tcgtacggga gattgttcct
1261 ggccaacccc gacctgccgg agaggttcag gcagaaggcg gctctgaacg cgtatgacag
1321 gagcaccttc tacacgcctg atcctgtggt gggctacacg gactacccgt ttcttgagca
1381 gcctctagct gtttgattga ttcgactgac ccatctgttg atactatggt caaagttggt
1441 gcaagtcagc aataaattaa agctagtttg tggtcgacct tacgaataaa atggagtggt
1501 ggacatgcat gttacgctac tttgtatatg tagcattttg caagaagcct atatcagggg
1561 caaagtcaca gagaggctga gggtggtata aagaaactct tttttctgtt ttt
//