LOCUS AK121534 2083 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033031A07, full insert
sequence.
ACCESSION AK121534
VERSION AK121534.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2083)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2083
/clone="J033031A07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2083
/db_xref="Osa1:LOC_Os07g15460"
/note="(Rice Genome Annotation Project) metal transporter
Nramp6, putative, expressed"
/note="mapping to R07-TIGRv4S1-000370F (Chr.7: short
arm=8964329, long arm=8969161, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 503 a 461 c 540 g 579 t
ORIGIN
1 ggcagagatc ggggttcggc gccggcggcg agttgttgag aggcaaggca aactcaggcg
61 actgagctaa agaagccgca ctagtatggg ggtgacgaag gcggaggcgg ttgccggcga
121 cggcgggaag gtggtggacg acatcgaggc gctcgccgat ctcagaaagg agccagcatg
181 gaaaaggttt ttgtcccaca ttggaccagg ctttatggtc tgtttggctt gcctcgatcc
241 tggaaatatg gagactgatc tacaagctgg tgccaatcac aaatatgagc ttctttgggt
301 gattttgatt ggcctgatct ttgcactgat tatacaatca ttatcggcta atcttggagt
361 ggtgacaggg cgccatcttg ctgagctgtg caagactgaa tatccagtat gggtgaaaac
421 ctgcttatgg ctgctagcag aactagctgt gattgcttcc gatattccag aagttatagg
481 tacaggattt gctttcaacc ttttgttcca cataccagtg tggaccgggg ttctcattgc
541 tggctctagc acgcttcttc ttcttggact gcaaagatat ggggtaagga aactggaggt
601 tgtggtcgcg ctattggtgt ttgtcatggc agggtgcttc ttcgtggaga tgagcatagt
661 caagcctccg gttaatgagg tccttcaagg attattcatc cccaggctca gtgggcccgg
721 tgccacagga gactccattg cccttcttgg ggctcttgta atgccgcaca atctattctt
781 gcactctgcc ctggtgctgt cgaggaatac acccgcatca gcaaaaggaa tgaaggatgt
841 ctgtaggttc ttcctctttg agagtgggat agctcttttc gtggctctgc ttgtcaacat
901 tgcaatcatc tctgtctccg gcactgtatg taatgcaacc aacctttcac cagaagatgc
961 tgtaaaatgc agcgacctta cattggactc ctcatccttc ctcctcagga atgtgctagg
1021 aaagtcaagt gcgacagtgt acggtgtagc actcttggct tctggacaga gctcgaccat
1081 tactggcact tatgctgggc aatatgttat gcaggggttc ctagacatca aaatgaaaca
1141 gtggcttcgg aacctgatga cacgcagcat tgccattgtg cctagcttaa tcgtctccat
1201 cattggaggg tctagtggcg ccggtcgtct catcgtcatt gcatcgatga ttctgtcctt
1261 tgagctacca tttgctctga tccctcttct caagttcagc agcagcagca acaagatggg
1321 tgaaaacaag aactccatct atattgttgg attctcctgg gtgctggggt tcgtcatcat
1381 cgggataaac atctacttcc tcagcacaaa gctggtcggc tggatcctcc acaacgcgct
1441 cccgacattc gccaacgtgc tcatcggcat cgtgctgttc ccgctcatgc tgctctacgt
1501 cgtcgccgtg atctacctga cgttcaggaa ggacaccgtc aagttcgtgt ctcgtcgtga
1561 gctgcaggcc ggcgacgaca ccgagaaagc acaggtagcc acctgcgtcg ccgacgagca
1621 cagcaaagag ccacccgtgt agtacccttc cagaccggtt accggtgttg gctggttttt
1681 attggataga tgtttaggtc caattttttt tatataaaaa atccaataga tgtttaggtc
1741 caaatttttg aattcaaaaa ccggttagca gtgataaccg gctgaaattt tggcccatgg
1801 gagtagattg ttgctttttt tcttagtgat tagttattgg cagattggca gaatgttgta
1861 gctaggcaat ctaattgtat ggttagatat ttagtcataa atccaagagt gagttttctt
1921 ggatgcgagg acaaggacaa tctaattgta tggttagata tttagtcata aatccaagag
1981 tgagttttct tggatgcgag gacaaggaca aatataaatg taaataaatg cagttaaagt
2041 aacaccttgc tcaaatataa atgtaaataa atgcagttaa agt
//