LOCUS AK121489 1980 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023150L05, full insert
sequence.
ACCESSION AK121489
VERSION AK121489.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1980)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1980
/clone="J023150L05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1980
/db_xref="Osa1:LOC_Os08g08210"
/db_xref="RAP-DB:Os08g0180100"
/note="(RAP Annotation release2) Similar to Enhancer of
zeste homolog 2 (ENX-1)"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase ATXR3, putative, expressed"
/note="mapping to R08-TIGRv4S1-000200F (Chr.8: short
arm=4686310, long arm=4690288, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 542 a 392 c 470 g 576 t
ORIGIN
1 ggaagggtct tggagttgtt tgtaacaaaa cgggtggatt tggtgtagac gactttgtca
61 tcgagttctt tggggaggta tacccttctt ggagatggta tgaaaaacaa gatggcatta
121 agcatataca aaacaatagc gacgatcaag ctcctgagtt ttacaacatt atgctagaac
181 ggccaaaggg agaccgtgat gggtatgact tggttttcgt tgatgcaatg cataaggcta
241 actatgcgag cagaatttgt cactcctgca accctaactg tgaagcaaaa gtaacggctg
301 tggatggtca ttatcagatt ggaatttaca ctgttcgacc aattgcagaa ggcgaggaaa
361 tcacttttga ttacaactct gttactgaga gtaaagaaga gcacgaagcg tcagtttgtc
421 tctgtggaag tcaaatatgc aggggcagct atttaaattt ttctggggaa ggagcttttg
481 aaaaggtctt gatggaattc catggtgtgc tcgatcgaca tagtcttctg ttacaggctt
541 gtgaagcaaa ctctgtttct caacaagact taattgactt ggggagagct ggtcttggta
601 cctgtttgct tgctggtttg cctggatggc ttgttgctta cactgctcac ctggtgcggt
661 ttatattctt tgagagacag aaacttcctc atgagatctt taaacacaat gtggacgaga
721 agcgccagtt tttcacagat ataaacatgg attccgagaa gaatgatgcc gaggttcagg
781 ccgagggagt tctgaattca agattacaga atttgactca tacacttgac aaggtaagat
841 atgtcatgag atgcatattt ggggatccca agaatgctcc tcctccactg gtgaggctaa
901 ctgggagaag tctagtttct gccatctgga aaggggaagg ctcgttagtt gatgaacttc
961 ttgagtcaat ggaacctcat gttgaggaag atgtacttac tgacctcaaa gccaaaattc
1021 gtgctcatga tccatctggt tccgaggaca ttgagggaga aatccgaagt tctcttttat
1081 ggttgcgtga tgagctgaga actctttcat gcacatacaa gtgtcggcat gatgctgctg
1141 ctgatttgat tcacatgtat gcttacacaa agtgtttttt cagagtccga gattacaaga
1201 cggtaaaatc tccaccggtt cttatcagtc ctcttgattt aggtcccaaa tatgcagata
1261 aactgggacc aggcttccag gagtactgta agacataccc agaaaattat tgcttaggtc
1321 aactcattta ttggtatagc cagaatgcgg agcctgaatc tagattgaca agagctagaa
1381 agggttgtat gtcattgcca gatgtatcct ccttctatgt gaagtcagta aaaccaacac
1441 aagagcgagt ctatggcagc agaactgtga gattcatgtt agcgcgcatg gagaaccagg
1501 cacaaaggcc atggcccaag gaccggatat gggttttcaa gagtgaccca agattctttg
1561 gtactccaat gatggatgcc gtattgaata attcccccct tgacaaggag atggtgcatt
1621 ggctcaagac aagatccaac gtcttcctag gctagccaag gaattgtagg cagagggtat
1681 tggttttttt cctttggaga ttttagtcag acaccattct tttttcttcc tactcacacc
1741 tttcctacct aatcatgggg atttagcttt tagatggcag ggtaacaaca gtctctctca
1801 ccttccccat ttgtacagcc ccctcctccc cttaccttgt agagatgtgt tccattatta
1861 actgatagat ccatcattga tttaatgtag cgccttttcc cgttgcgtag aattgtcacc
1921 tcccaatgtg caatgtggat attcatgtgt aaatgcaaaa cagtagcaat cttaaattcc
//