LOCUS AK121462 1732 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023144F17, full insert
sequence.
ACCESSION AK121462
VERSION AK121462.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1732)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1732
/clone="J023144F17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 75..1583
/db_xref="Osa1:LOC_Os01g40860"
/note="(Rice Genome Annotation Project) retinal
dehydrogenase 1, putative, expressed"
/note="mapping to R01-TIGRv4S1-000944F (Chr.1: short
arm=23424184, long arm=23433068, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH00504.1"
/translation="MAAANGGDSKGFEVPKLEIKFTKLFINGRFVDAVSGKTFETRDP
RTGEVIAKIAEGDKADIDLAVKAAREAFDHGPWPRMSGFARGRILHKFADLVEQHVEE
LAALDTVDAGKLFAMGKLVDIPGGANLLRYYAGAADKVHGETLKMARPCHGYTLKEPV
GVVGHIVPWNYPTTMFFFKASPALAAGCTMVVKPAEQTPLSALFYAHLAKLAGVPDGV
LNVVPGFGPTAGAAISSHMDIDKVSFTGSTEVGRLVMEAAAKSNLKPVSLELGGKSPV
IVFDDADLDTAVNLVHMASYTNKGEICVAGSRIYVQEGIYDAFVKKATEMAKKSVVGD
PFNPRVHQGPQIDKEQYEKILKYIDIGKREGATLVTGGKPCGENGYYIEPTIFTDVKE
EMSIAQEEIFGPVMALMKFKTVEEAIQKANSTRYGLAAGIVTKNIDVANTVSRSIRAG
AIWINCYLGFDPDVPFGGYKMSGFGKDMGMDALEKYLHTKAVVTPLYNTPWL"
BASE COUNT 378 a 522 c 513 g 319 t
ORIGIN
1 ttgacatctc caaacttcca atttctctct ccacatctct ctgtgtttct tttatttctc
61 ctctgctcgc ggcgatggcg gcggcgaacg gcggcgacag caaggggttc gaggtgccga
121 agctggagat caagttcacc aagctcttca tcaatggccg cttcgtcgac gccgtctccg
181 gcaagacatt cgaaacccgt gacccgcgca ccggcgaggt catcgccaag atcgccgaag
241 gagacaaggc cgacatcgac ctcgccgtga aggccgccag ggaggccttc gaccatggcc
301 cctggccaag aatgtccggc tttgcgaggg gaaggatcct gcacaagttc gcggacctgg
361 tggagcagca cgtggaggag ctggcggcgc tggacacggt ggacgccggc aagctgttcg
421 cgatggggaa gctcgtcgac atccccggcg gcgcgaacct gctccggtac tacgccggcg
481 cggcggacaa ggtgcacggc gagacgctca agatggcgcg gccatgccac gggtacacgc
541 tcaaggagcc cgtcggcgtc gtcggccaca tcgtgccgtg gaactacccc accaccatgt
601 tcttcttcaa ggccagcccg gcgctcgccg ccggctgcac catggtcgtc aagcccgccg
661 agcagacccc cctctccgcg ctcttctacg cccacctcgc caagcttgcc ggcgtccccg
721 acggcgtgct caacgtcgtc cccggcttcg gccccaccgc cggcgccgct atctcctccc
781 acatggacat tgacaaggtg agcttcaccg gctcgacgga ggtcggccgg ctggtgatgg
841 aggcggcggc gaagagcaac ctgaagcccg tctcgctcga gctgggtggc aagtctccgg
901 tcatcgtgtt cgacgacgcc gacctcgaca cggccgtgaa cctggtccac atggcctcct
961 acaccaacaa gggtgagatc tgcgtcgccg gctcgcgaat ctatgtccag gaggggatct
1021 acgatgcgtt cgtgaagaag gcgaccgaga tggccaagaa atcggtggtc ggagatccgt
1081 tcaacccgcg agttcatcaa ggccctcaga ttgacaagga gcaatacgag aagatcctca
1141 agtacatcga catcggtaag cgcgaaggcg cgacgttggt caccggaggg aagccctgcg
1201 gcgaaaacgg gtactacatc gagcccacca tcttcacgga cgtcaaggaa gaaatgtcga
1261 tcgcgcaaga ggaaatcttc gggccggtga tggccctcat gaaattcaag acggttgagg
1321 aggcgatcca gaaggcgaac agcacccggt acggcctggc tgccggcata gtcaccaaga
1381 acatcgacgt cgcgaacacg gtttcgcggt cgatccgggc aggggcaatc tggatcaatt
1441 gctacctcgg cttcgacccc gacgtgccgt tcggggggta caagatgagc ggcttcggca
1501 aggacatggg catggacgcc cttgagaagt acctccacac caaggcggtg gtcacccctc
1561 tctacaacac cccttggcta tgatctgatg atgaacagca cagaaagatt aattacagtg
1621 gaaaaaaata acatttctat atatacagct gaaaggttgg gttatatttg tggttagttg
1681 attgcttgta tcaaatatca atttgtcgga ataaagacag tatatttcag tt
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