LOCUS AK121426 1419 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023135L03, full insert sequence. ACCESSION AK121426 VERSION AK121426.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1419) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1419 /clone="J023135L03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 86..1195 /db_xref="Osa1:LOC_Os09g15420" /db_xref="RAP-DB:Os09g0323000" /note="(RAP Annotation release2) Similar to UDP-galactose 4-epimerase-like protein" /note="(Rice Genome Annotation Project) UDP-glucose 4-epimerase GEPI48, putative, expressed" /note="mapping to R09-TIGRv4S1-000216R (Chr.9: short arm=9436788, long arm=9441552, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAH00483.1" /translation="MAGGEVVAVAAAAAGTSRTVLVTGGAGYIGSHTVLQLLAAGFRV VVADSLGNSSELAVRRVAALAGDKARNLSLHKVDIRDKGGLEKVFSSTRFDAVVHFAG LKAVGESVQKPLLYYDHNVAGTIILLEVMAAHGCKKLVFSSSAAVYGSPKNSPCTEEF PLTPHNPYGRTKLIAEEICRDIYHSDSEWSIILLRYFNPVGAHPSGYLGEDPCGIPNN LMPFVQQVAVGRRPSLTIFGNDYATKDGTGVRDYIHVVDLAEGHIAALRKLFESSIGC QAYNLGTGKGTSVLEIVNAFEKVSGKKIPLVIGPRRPGDAEILFSSAAKAEREFKWKA KYGIEEMCRDQWNWASKNPFGYASPDSTKQNGHSH" BASE COUNT 361 a 308 c 394 g 356 t ORIGIN 1 ggaaggtcga agcagatcca ctcgcgcgct cgcgagggtg cgtcgcgagc gggaggtcag 61 agaaggggga tcggccgatc gatcgatggc ggggggcgag gtggtggcgg tggcggcggc 121 ggcggcgggg acgagcagga cggtgctggt gacgggaggg gccgggtaca tcgggagcca 181 caccgtgctg cagctgctcg ccgcggggtt ccgcgtcgtc gtcgccgaca gcctcgggaa 241 ctcctccgag ctcgccgtcc gccgcgtcgc cgcgctcgcc ggggacaagg cgcggaacct 301 ctccttacac aaggttgata ttcgtgataa gggtggactg gaaaaggttt tttcttcgac 361 aagatttgat gctgtcgttc attttgctgg tctgaaagct gtgggtgaaa gtgtgcagaa 421 gccattgctt tattatgacc ataatgttgc tgggacaata attcttctag aagttatggc 481 agcccatgga tgtaaaaagt tggtgttttc atcgtcagct gcagtttatg gatcacctaa 541 aaactcaccc tgcacagaag agtttcctct cactccacac aatccatatg gcagaaccaa 601 gctcatagca gaggagattt gccgtgatat ataccattca gattctgaat ggagcataat 661 tttacttagg tacttcaatc ctgttggagc tcatcccagt ggataccttg gtgaagaccc 721 atgtggaatt cctaacaacc tcatgccctt cgtccagcaa gttgctgtcg ggaggagacc 781 gtcacttaca atatttggaa atgactatgc aacaaaagat gggacagggg tacgtgatta 841 tattcatgta gttgatcttg ctgaggggca tattgctgca ctacggaagc tgtttgaaag 901 ctcaatagga tgtcaagcat acaaccttgg aacaggaaag ggaacatcag tgttggaaat 961 agttaatgca tttgagaaag tttctggaaa gaaaatacct ttggttattg gtccacgacg 1021 ccctggtgat gctgagattc tcttttcgtc agctgctaaa gcagagagag aattcaagtg 1081 gaaggcaaaa tatggcatcg aagaaatgtg cagagaccaa tggaactggg cgagcaagaa 1141 tcctttcggg tacgcctcgc ccgactccac caagcagaat ggtcattcac actgatcaac 1201 gccgattggt ctgtgtgaac tcagttgtac atgcaacgta gaactacagg tcgagatcga 1261 tgtagatcta gtcggtcagt catacagaga aagcttagaa aagatttgtt ctcttctttt 1321 ggaccagtat tggtataaat ctacccttct gcatatagtt caaaattgtt gtaggaacat 1381 tgctatagtc agtcagctaa ttcaattctt tttcttgct //