LOCUS AK121422 3214 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023133N01, full insert
sequence.
ACCESSION AK121422
VERSION AK121422.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3214)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3214
/clone="J023133N01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 84..2969
/db_xref="Osa1:LOC_Os11g29380"
/db_xref="RAP-DB:Os11g0484300"
/note="(RAP Annotation release2) Similar to Mcm2-prov
protein"
/note="(Rice Genome Annotation Project) DNA replication
licensing factor Mcm2, putative, expressed"
/note="mapping to R11-TIGRv4S1-000505F (Chr.11: short
arm=16544221, long arm=16550186, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH00480.1"
/translation="MDDSENNAPSTPGSPGFSTDRLPPNTTTSRGATDPSSYSDDDDD
DVVGAEEAEVDPNVLPEDDGVVAAEEEEDGEDLFNDNYLDDYRRMDEQDQYESVGLDD
SIEDERNLDEIMADRRAAEAELDARDVRTGAAPDRKLPRMLHDQDTDEDMSFRRPKRH
RANFRPPREPRTPRSDDDGDGATPSSPGRSQRGMYSGGDVPMTDQTDDDPYEDEFDEE
DEMNMYRVQGTLREWVTRDEVRRFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLA
NKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEEVAKNVVFDLHKNYRNIHQKIYV
RITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLGPFFQ
NSYTEVKVGSCPECQSKGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILL
NDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVAKKQDLFSAYKLT
DEDKAEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRG
DINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEG
GALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAAN
PIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDPFTDEMLARFVVDSHARSQPK
GANLEDRVPTDVEDDPLAAARQADPDILSQDMLKKYITYAKLNVFPKIHDADLDKISH
VYAELRRESSHGQGVPIAVRHIESIIRMSEAHARMHLRSYVSQEDVDMAIRVLLDSFI
STQKFGVQKALQKNFRKYMTYKKDYNELLLLLLRTLVKDVLHFEEIVSGPTTRLTHIE
VKVEDLKNKAQEYEIYDLRPFFSSAHFRDNNFVLDEGRGIIRHPLAA"
BASE COUNT 938 a 705 c 786 g 785 t
ORIGIN
1 gagcagccac tcctccccac cttactcccc cccgcttcca ctcccccgaa ccttccagaa
61 ccttctcccg ctcccccgcc gagatggatg actcggagaa caacgcgccg tcgacgccgg
121 ggtcgccggg gttcagcaca gacaggctgc cgccgaacac caccaccagc cgcggcgcca
181 ccgacccgtc ctcctactcg gacgacgacg acgacgacgt ggttggcgcg gaggaggcgg
241 aggtcgaccc caacgtgctc cccgaggacg acggcgtcgt cgccgccgag gaggaggagg
301 acggggagga cctcttcaac gacaactacc tcgatgatta ccggaggatg gatgagcagg
361 accagtatga atcggttggg ttagatgact cgatagagga tgaaaggaac ctggatgaga
421 tcatggcaga tagaagggct gctgaagcag aacttgatgc aagggatgtg aggactggtg
481 cagcacctga taggaaattg ccacggatgc tacatgatca agacacagat gaggatatga
541 gcttcaggcg tcctaaaagg cacagagcta attttagacc accaagggaa ccaagaacac
601 caagaagtga tgatgacggt gatggtgcca cgcctagttc acctggaaga tctcagcgtg
661 gaatgtattc tggaggggat gtacctatga ctgaccagac tgatgatgat ccgtatgagg
721 atgaatttga tgaagaagat gagatgaaca tgtaccgtgt acaaggaact cttagagagt
781 gggtcacaag agatgaagtc cgccgcttta tcgcaaagaa gttcaaagaa ttccttctaa
841 catatgtaaa cccaaagaat gaacaaggag agtttgagta tgttcgacta atcaatgaga
901 tggttctagc taacaaatgc agcttagaga tagattacaa gcaatttatt tatatacatc
961 caaacattgc tatatggttg gctgatgcac ctcaatcggt gctagaagtt atggaggaag
1021 ttgccaaaaa tgttgttttt gatctccata agaactatag gaacattcat caaaaaatct
1081 atgtccgaat aaccaatctt cctgtctacg accaaatacg caatatcagg caaatccatc
1141 tgaacacaat gattcgaatt ggtggtgttg ttactcggag atcaggtgtt tttcctcagc
1201 tacaacaggt caagtttgac tgcagcaaat gtgggactgt cctgggcccc ttcttccaga
1261 actcttacac tgaagtcaag gttggatcct gccctgagtg ccaatccaaa gggccattca
1321 ccatcaatgt tgagcaaacc atatatagga actaccagaa actcactctt caggaaagcc
1381 caggaattgt tcctgctggc aggcttccaa gatacaagga agtgatactt ctgaatgatt
1441 tgattgactg tgctcgacca ggagaggaaa ttgaggtcac tgggatatac accaacaatt
1501 ttgacttgtc tttgaataca aagaatggtt tcccagtttt tgccacagta gtggaggcaa
1561 actatgtggc aaaaaaacag gatctgttct ctgcttacaa attaactgat gaggacaagg
1621 cggagattga gaagttggca aaagatccac ggatcggtga aaggattgtc aaatcaattg
1681 caccatccat atatggtcat gaagatatca agactgccat tgcactagct atgtttgggg
1741 ggcaagagaa gaatgtcaag ggaaagcatc gcttgagagg agatatcaat gtactcctct
1801 taggtgatcc aggcactgca aaatcccaat ttctcaagta tgttgagaaa actggacaca
1861 gagcagtgta cacaactgga aaaggagctt ctgctgttgg actcaccgca gcagttcaca
1921 aggatccagt aacacgggaa tggacacttg agggtggtgc actagtgctt gctgatagag
1981 gcatatgcct tattgatgaa tttgataaga tgaacgatca agatagggtg agtattcatg
2041 aggccatgga gcaacaaagt atcagtatat caaaggccgg aattgtcaca tcccttcaag
2101 ctcggtgcag tgttattgct gcagcaaacc caataggagg aagatatgat tcatcgaaga
2161 cattcaccca gaatgttgaa ctgacggatc caattatttc acgttttgat gtcctttgtg
2221 ttgtgaagga cattgttgac ccatttacag atgaaatgct tgcaaggttt gttgtagata
2281 gtcatgcaag atctcaaccc aagggtgcta accttgaaga tagggttcca actgatgttg
2341 aggatgatcc attggctgct gccagacaag ctgacccaga tatcctttct caagacatgc
2401 tgaagaagta cataacttat gccaagttga acgtgtttcc caaaattcat gatgctgacc
2461 tggacaagat tagccatgtt tacgcagaac ttcgtcgtga gtcatctcat ggtcaaggag
2521 tccctattgc cgtaaggcat atcgaatcca ttattcggat gtcagaggca catgcaagga
2581 tgcatttgag gagctacgtg tctcaggaag atgtcgacat ggctatccgc gtcctgcttg
2641 actcatttat ttcaactcag aagtttggtg tacagaaagc acttcaaaag aatttcagga
2701 aatacatgac ctataagaag gattacaatg agctgctctt gcttcttctg cgcaccctgg
2761 tcaaggatgt gctgcacttc gaagaaatcg tttcaggacc aacgacgcgc ctgactcaca
2821 tcgaggttaa agtagaggac ctgaagaaca aggcccagga gtacgaaatc tatgacctga
2881 gaccgttctt ctccagcgcc cacttcaggg acaacaactt cgtcctcgac gaagggcggg
2941 ggatcatcag gcaccctctt gctgcctaac tacagaagat catctgtgac ccatctgaca
3001 atgaacaatt tgagctacct catgggatta tcagacatag tgtaatcatc aaatggcaac
3061 tcctttgtgc tttttagaga ctgttgcatg ttatccagct gcatttggat agggtgtacc
3121 gtgtgtactt tcttaacatt gtaattctgc aagtatggta gaaaatgata aatctgtgtc
3181 aatcaatgta tcattgtttt gcattattgt tttc
//