LOCUS AK121369 2067 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023125K15, full insert
sequence.
ACCESSION AK121369
VERSION AK121369.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2067)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2067
/clone="J023125K15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2067
/db_xref="Osa1:LOC_Os06g50140"
/db_xref="RAP-DB:Os06g0715300"
/note="(RAP Annotation release2) Similar to
CEL5=CELLULASE 5 (Fragment)"
/note="(Rice Genome Annotation Project) endoglucanase 1
precursor, putative, expressed"
/note="mapping to R06-TIGRv4S1-001196R (Chr.6: short
arm=30363056, long arm=30365664, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 417 a 654 c 602 g 394 t
ORIGIN
1 gggtcgagac ggtcatggcg agcctctaac tccccaccaa ctgccgcctc tcgtcgcctc
61 gcctcgccgg cgccacctcc gcattccgtt ccgaccagcc gatcggtttc ttcctcgccg
121 ttgcaacctt cgagcgcgat cgatcgaggc ggttgaccgc cgattcgccg cgcggcgttg
181 cattgcacgc ggctttccag ttgataaatc aatcatcatc cccttgatcg atgcgagtgg
241 cgttcttgtt cgatcgagag gaggagatcg tgatcgcgag cgatccgggc ggggcggcgc
301 gccatcgatg gcgaactgcg tgcggtgctg ctgctggctc ctggtgctga tgctcatggc
361 gctcgcgatc accgccgccg tggtgttcgt ccgctacaag aacggcgagg gggtcttccc
421 cttccccggc gtgcccggcg ccgtcgacca caagtacgcc gacgcgctcg ccgtcgccct
481 ccagttcttc caggtccaga aatccgggaa gctggtgaac aacacgatcc actggagagg
541 tgactcggcg ctggacgacg gcaaggaggc cgggattgat ctctccaagg ggatgtacga
601 cgccggcgac cacatgaagt tcggattccc catggcgttc acggccacca tgctctcttg
661 gtccgtcctc gagtacggcg acgccatgcg cgccgccgac cagcgcgact ccgccattga
721 cgcgctgaat tggatcatgg attacctcgt caatgcccac ccctccgacg acgtcctcta
781 catccaggtg ggtgatccta aagcagacca caagtgctgg gagcggccgg agaagatgaa
841 ggagaagagg ccactgacca agatcacgcc caagtccccc ggcagcgacg tggcggcgga
901 gacggcggcg gccatggcgg cggcgtcgct ggtgtacaag acgatcaaca agacgtactc
961 gtcgtcgctc ctggaccacg gcgagaggct gttcgccttc gccgacaagc accggggatc
1021 ctacacccgg acgttcccgg agctcagcgc gttctacaac tccaccacgt accaggacga
1081 gctcctctgg gcggcgagct ggctctacca cgccaccggc aaccacagct acctcgccta
1141 cgccaccggc aagaacaagg acttcgccga cctgggcaac ccgagatact tcagctggga
1201 cgacaagcgc gccggaaccg aggttctttt gtcgagggtg agcttctttg cttcgcaagg
1261 atcagacgtt gcacaagacg atgttcttgg gatgtacaag cagactgctg atgccgtcat
1321 gtgcattctc ctgccggatt cagagaccgc cgctttcaga acagaaggtg gtttgctgta
1381 cgttgccgag tggaactcac tccagcaccc ggtggcatcg gcgttcctcg ccgcggttta
1441 cagcgactac atgcagagct ccgggaagac ggagctgagc tgcagcgggc agggcttctc
1501 gccggccgac ctgcgcaaat tcgccaagtc ccaggcggat tacttgctag gcagcaaccc
1561 gatgaagatt agttacctag tcgggtacgg cgaccggtac ccggagaagg tgcaccaccg
1621 cggcgcgtcc atcccggagg acgtcgacac cggctacgac ggccacaagt ggctggagac
1681 gtccaagccc aacccaaacg tcgccaccgg cgcgctcgtc ggcggtccgt acaagaacga
1741 cagcttcgtc gacgagcgcg acaacgtgat gcagaacgag gccaccacct acaacagcgc
1801 cctcgtcgcc ggcttgctct ccgccctcgt ctccacctcc tccctcgcgc gatccttgtc
1861 atgatctgca ttgctcggat tctgacggtt taccactcat tagatggcat gcaaatgctg
1921 gctcaaactg atgaagaaat ggtagggagg atgttgtatc atggatcgaa gaagtcggtg
1981 atctgtatgt gaaaagggta attagtactg tactagtact tatacttact aacaaaaata
2041 atcattagaa actacttttg tttgttc
//