LOCUS AK121362 1964 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023124E16, full insert sequence. ACCESSION AK121362 VERSION AK121362.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1964) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1964 /clone="J023124E16" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 393..1460 /db_xref="Osa1:LOC_Os01g01050" /db_xref="RAP-DB:Os01g0100600" /note="(RAP Annotation release2) Single-stranded nucleic acid binding R3H domain containing protein" /note="(Rice Genome Annotation Project) R3H domain containing protein, expressed" /note="mapping to R01-TIGRv4S1-000005F (Chr.1: short arm=19642, long arm=23696, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAH00447.1" /translation="MINFAVQSRCAPTNSLCSCVALCERNFKLEQVEELASLIKDNLY SKHLVLSTEETLVGILQNQYHNSDDDEDEDDIVAAYRGTNRNILELQPASSYQRLLLH RLADIYGFVHESVGEGEDRHLVLQRCPETAIPPVLVSDVLWEYDNKDTSTSVVVKRKD TDLEEAWKEDAQENISAEISHLKNDADLKALQKSVAPPAPSLKEREAAYRAARERIFS AHDAKGNGTAVAKPRHVPAVAQRMIAHALGKKVESPTETAAVKNGKGKEPAESSRNKL NPRTAGGKEDSRYVENGRMRLHTGNPCKQSWRTSNSRAASSVSPDELKREQVGAAKRM FVHALRLPGVEGSDGPVRKGK" BASE COUNT 525 a 432 c 570 g 437 t ORIGIN 1 gacaagtcac agggaggagt cgaaaagagt caataccagc cgcgccaccg ctccctcgct 61 gacctgcccg tgttcgcccc tctcgccggc cgccgacccg cccctgctgc tcaccgctcc 121 agcctccgct catcccaagc cttccaccac aaccccccac ccctgctcgc ccgcgcaccc 181 agctcaccag cgcacccgtc tggggtctgc ctgccgcttc tccctcccgt gcaggtgcag 241 gggaagaggc aaggagggca agaccggggc gcagtgggga gtacggagga agctggtgca 301 gcgtgggaga gagggagctg gaaaagaagg aagaaagggg ggcagtacaa gggggacttg 361 ggaggaggaa gaagggggaa tattttgagt atatgatcaa tttcgccgtc caatccagat 421 gtgcgccaac caattcgcta tgttcttgtg ttgctctgtg cgaacgaaac tttaaactgg 481 aacaggttga ggagctggct tcactcatca aggacaacct ctacagcaag cacctcgtcc 541 tctctactga ggaaaccctc gtcgggatcc tacagaacca gtaccacaac tctgacgatg 601 acgaggatga ggacgatata gtggcagcat accgcgggac aaataggaat atcctagagc 661 tccaacctgc cagctcctat caacgtcttc ttttgcatcg ccttgccgac atctacgggt 721 ttgttcatga atctgttggt gaaggtgaag atcgacactt agttctccag cgctgccctg 781 aaactgccat cccacctgtc ctcgtaagcg acgtattatg ggagtatgac aacaaagata 841 catcgacatc tgttgtagtg aagaggaaag atacagatct tgaagaagcc tggaaggaag 901 atgcccaaga aaatatttct gctgaaatct cgcatttgaa aaatgatgca gatttgaagg 961 ctttgcaaaa gtcagttgca cccccagcac cgtcactcaa ggagagggaa gctgcttatc 1021 gagctgctcg cgagcgtatc ttctcagcgc atgatgccaa gggaaatggg acagcagtgg 1081 caaaacctag gcatgttcct gctgttgctc aacggatgat cgcgcatgca cttggcaaaa 1141 aagttgagag cccgacagag acagcagccg tgaagaatgg caaaggaaag gagccagcgg 1201 aaagtagtag gaacaagtta aacccacgca cagcaggtgg caaggaagat agcaggtatg 1261 ttgagaatgg cagaatgagg ttgcacaccg ggaatccatg taagcagagc tggcgtacaa 1321 gtaacagtag agctgctagt agtgttagtc ctgatgaact gaagagggag caggttggag 1381 cggcaaagag gatgtttgtg catgccctgc ggctgcctgg tgttgaagga agtgatggtc 1441 cggtgcggaa aggcaagtaa gagtcgagtt gagatgggag gtgtaatgta ggtattagga 1501 tggagtgaaa tggcaactct gtgatgattt tcatctggtg atactatgct ggtataagat 1561 gagatggaag gcctggtatc ccttggtgga agaagttgaa gcgcaaaatg caatgctggg 1621 gatatgcaag tggaagaagt tgaagcgcaa aatgcaatgc tgggggatat gcaagtggaa 1681 gtggtgagag ctagctgctt gccgatggca gcagttgtgg caatattgag tgcaattgac 1741 aggtctttgt ttgttttgtt tttttttttt gccagaagct gcagtttagc aggtccttat 1801 tttcgtcaga agttacaaag agagaatatg ccaattttta gctttatatt ttgctgaagg 1861 cagacaagtt gtagaggaat atgctgatcc ttagaaagaa ctttgtgtag cctatttgga 1921 tggtttcaga ctttcagtga tagagtcgga gcaatgttgg tccc //