LOCUS AK121330 3759 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023118F05, full insert sequence. ACCESSION AK121330 VERSION AK121330.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3759) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3759 /clone="J023118F05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..3759 /db_xref="Osa1:LOC_Os11g37000" /db_xref="RAP-DB:Os11g0578500" /note="(RAP Annotation release2) Heat shock protein DnaJ family protein" /note="(Rice Genome Annotation Project) dnaJ domain containing protein, expressed" /note="mapping to R11-TIGRv4S1-000636F (Chr.11: short arm=21337868, long arm=21342224, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 1124 a 763 c 832 g 1040 t ORIGIN 1 gggtctccta ctcactcacc tcacctctgc ctctgctctt cctccaagaa cctaaccacg 61 cccaccgccc accacggtgg ctcgccggcg ccggccgccg cggatcacgt tccagcccca 121 gctcagctcg gaggtagagc atgttaatgc cattctggaa caagtatatg tgaagggttt 181 cttggtcaaa tttctggaat actttgatgg aatgcaacag agaggaggcc ttcagggcca 241 gagaaattgc tgtaaagaag ctggaaaata gagactttgt cggcgcccgc aagatcgcga 301 ttaaagctca aaggcttttt cctgagcttg agaacatctc ccagctgtta attatctgtg 361 aagttctttc ttcagctgag gcaaagatct ctggagagtt ggattggtat ggtgttcttc 421 aggtggataa aatggcagac gaaacagtaa taagaaggca atacaacata ctttcgtatc 481 ggcttcatcc tgataataat actctgtttg gtgccgaagc cgcattcagg tttgtttcag 541 aagctcatgc aatattgagt gatcatgtga agaggtctct gtatgacacc aaaagacagt 601 gtgcttcaag agaagtggcc aaggaggcta cacagccacc aaacaagact gattcaaaca 661 taagcaatgt ggctggatcc atgacaccat ctgcttctgt gcttgtattc tggacaatat 721 gtccgcattg tcagaagcga tttctgtact accaacggaa ctttttggcc cgctgcagtg 781 attgtggtaa gaggttcttc gcaatcaaac tgcatgagca gtctgttccc tcgagaatcc 841 tatcaactgc tgcaaaaaag tctcagcttt caacgtcaga aatgttatca tttcaacgaa 901 gtagtgtccc caatcagcat caacaaggta aatgcttggt tacaagaagg cgaggccatt 961 caattttcag caatgaagca aactaaatct cacatctgcg cttttgacaa tgataagcct 1021 ggaactttgg taccaaagag ttctgatctt aagtccatct cagttaagaa tttgactaga 1081 gaaagtgcac ctgcagagga aaatgctgca gaatcatcca gtcttcagat attgggtaag 1141 agaaagcttt atgttacctc tgacagcagc catggtatga actccaatat taagaggcaa 1201 aggaagtata cttgtccatc cgattctgat tcgagtaatg agcagatatg taatgatgat 1261 gttgctgttc ctgataatca atctactgga cagaatgttc ccatcgaagt ggacagtgaa 1321 gaggaaagaa atgcaagaca tggaagcaac caacaaactt gtaagaaaaa tgttactgat 1381 actgcttctc agaagtctgt caattcggtg attgcctacc cttatccaga ctttgatttt 1441 tgcaagtcca gagatgctga agaaactgat gaatccataa aacaatatgg ctgggctggt 1501 gacatggcag gtaaaggcct ggtgacaaga agtgacagag ttcaattttc agaaattagc 1561 caagctaaat ctcatgtgcc tcctgctgac aacgatatac ccggaacttt ggtaccaagg 1621 agtcctgatc caaactccac cgctgtgcag aatttgactg gagaaagtgt atcagcagag 1681 acaaatgctc caggatcatc cagtcttcag atattgggtc ggagaaagct ctgtgatagc 1741 tctgacagca accgtgctat gaactctaat attgagagga aaatgaagta taattctcca 1801 tctgatgctg attggagtac tgagcaaaca tgtaatgatg atgttgctgt tactgagaat 1861 caatttgcca aacaacatgt ccccaccgaa gtggacagtg aagaggaagg aaatgaaaaa 1921 catggagaca atcaacaaag tcataggaaa gatgatactg atacttcttc tcagaattct 1981 gccaatcctg tgattgccta ctcttctaca gacttctttg attttgacaa gtccagagat 2041 gtgtcccaaa ttgcggttga tcagatctgg gcagtatatt aaggtcatga ttgcatgcct 2101 agagcttatg cctgaataaa tcatgtcgat ccttccaacc tcaaagtgca gttcacttgg 2161 ctggtgcaca acacagtaaa tgaacaaaat tccaaatcga ccaatgaaaa actgccattt 2221 gcttgtggga acttctgctt aggagaaaca gatgtattgc acaatccatc aaggtactta 2281 tcccacagtg tttcatcgac aggcaaaaat gggaactcct gtgatataaa tcctaacatg 2341 ggtgaggtgt gggctcttta taaaggatgg agcatgcagt tgagctctca tgcagataga 2401 tatcaatcat atgggtatga tattgtgcaa gtcctttcta gtggctcaat ggatgatggt 2461 gtcacggttt caccgctggt caggattgca gggtttgtca gtctatttgc gaaagtgaag 2521 aacgagtcat gtttttcgat atcatcatgt gaggtacttc atttttctca cagtatcccc 2581 ttctataaaa cgaacggaaa tgaaagggta ggtgttgcag aagggttcct ggaactagac 2641 actgcagctc ttccaagtga cttggattcg gcatttactt ccattactct tgaatcctac 2701 atggctcttg acaacaaaac aaatatcgaa ttaatcagtt atgtatgccc tgattcagaa 2761 ttctacaact tcgaacaaga ccgctcgcat gataagtttg aagctggcca gatttgggct 2821 ctttacagtg atactgataa atttcccaac ttctatggtt gggtaagcaa agttgagatg 2881 gaaccgttca acgtggattt ggcctggctt gaggcttgcc ctcaacgagc gcaggagaag 2941 ctgtggttgg agcatgatgt acctgtgagc tgtggtacat ttgaaatcca aaacatggaa 3001 acaaagttta atgaaaattg tgcattctcc catttaatag aaaccaaaca aattggagca 3061 aagtgcaagg ttcaaattca tccaaagata ggtgaggtct gggccatcta caagaactgg 3121 tcaaataagt gggttccttc ccgcagcact cgtggtacta agtatgctat tggcaagatc 3181 gtcgactcca ctgaagcttt cacattattt ggttatctga ctaaagttga tggttacatc 3241 tctgtgttca agcctgatgt acgaagggga attctgaaga ttcctgtgaa agagaacctg 3301 aggttttctc atcgaatacc atcgttttgt ctcacaaaag agaaaggtgg aaagctccat 3361 gactgctatg agctcgaccc agctgctgtt cctgatgttt ttctacacaa gaattgaagg 3421 aaaagaactc ccacaaaaaa ggactaatct tagaaattaa gagtgaagat atctcatgat 3481 agagtcatct agcattatga tatgtatctg agtttctgta cagggcgcgc ccaattatgt 3541 tagaaaagta ttcatgtttc ataatcatga ctaatttctg ttgaatttca cgctttctgg 3601 tgaaactgat ctacaatgct gatctattgc tttgctgtct gaagaaacta agaagaatat 3661 gtattcttct caagtttgaa ttatgtattt atgatacata acattaatgt acttatgtgt 3721 ctgaccatca gtcaatgtac atgttcctat atttcagcc //