LOCUS AK121318 3396 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023113P04, full insert sequence. ACCESSION AK121318 VERSION AK121318.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3396) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3396 /clone="J023113P04" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..3396 /db_xref="Osa1:LOC_Os12g18729" /db_xref="RAP-DB:Os12g0285100" /note="(RAP Annotation release2) Conserved hypothetical protein" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R12-TIGRv4S1-000385F (Chr.12: short arm=10819909, long arm=10830984, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 864 a 817 c 876 g 839 t ORIGIN 1 gactcctttc cctcctcctc atcctcatct tcatctctag acctcatctt ctccagccac 61 caccgcctcc cttcccaccg gtggtggcag cgggaagaca gcggctcggt tgagcccggc 121 ggggagggca cgatttggta tgggaggagc agcggcgact ccatccggcg gtggatccgc 181 cgcctcctag tcccagctct ctctcccccg atcctcctcc tccccttcct ccaccgccac 241 cacccacccc tctccctctc tcagatctgg tgcgcgggga gcggtggagg ctacggcggc 301 ggcggcggcg agatcggtag cagtgatggt ggagaggacg gatccgatgg cggtggttct 361 cgtcaaccag ttcaaggacg acgacagcag cggctgctgc aacgatggat aggctctggg 421 cggctcctcc actctcctcc cctctctcat atccagtggc tcggggtggt ggggcgtggc 481 cgacgcatcc ggcggcggag ctcggacgag ctgccaacta gtagcactcc agcaagcagc 541 gggtcagcgg agtccggagg gcgcacgtgc gccgcagcga ggtatcagca tggccaggcg 601 gcggctggct ggccggccgg gttcggcaag cggctaagca ggtgtttagc ggaggaagga 661 tcgatgtccg gcgccggaca gagccgtggt catcgccttg gattacacat tgattcggat 721 tggccagagg tcttgttgat caatgactat gcggtgttca tggggtacct gtcgatggtt 781 gtcaccggga cggggttcct ggtgctcacg tggtccaccg tcatcctcct cggtggattc 841 gtctccatgc tatccaacaa ggacttctgg agtctcacgg tgatcacgct cgttcaaaca 901 aggatattcg atgtttttct gaatggaaaa gtaagccaca ttgggtactc attgaagcgc 961 ttgtgcaagg ccgcacgctt catcgcgttg ccccataacc ataagaaggt tgggttcagg 1021 ggtgctgttc gagtgcttgt cttcaccatc gtcttgtgtc cgctgttcct gctctacatg 1081 tttgggctct tcgtttcccc ctggatttcg ctgtggcgtc taatccagca ggattacggc 1141 gtgacggccg gagacagcag cagcaaggca cacctgcagc ctgcgctggt ggttctctac 1201 tccctggccc tgttccaggg cgtcctcttc tactacaggg ccatctctgc ttgggaagaa 1261 cagaagctag tgaaagatgt ggccgacaaa tacatgtttg atacagtgtc gcgcagttca 1321 gtttcggact atttacatga gatcaaggtc ggatgtgaga atgacccgtc ctttgccaga 1381 gggaggaacc tgatcacata cgctgtcaag cttatggaat ccacatcacc ggatgggtac 1441 ctttcaggtg cacggattct tgatacactc atcaagttta atagagatga tgcatcgggg 1501 agcgaattac cggggcagag tatgcagata tacaatatga ttggatctgc atcctccagt 1561 cccatactcc acaacttagt tcagatgctg gatttcaaaa gtgcatatga tggagagatc 1621 aggttgcgag ccgcaaggat tgttgagcac tttgctggtg aggtccgttt agacaaaatc 1681 ctgcagggga ttcgatgtgt atcttccttg cttgaactcg agcagaaagg atttcagaat 1741 gaccaccata gttctttcca agaagacgac ggcgaccaac tttcttttga agaagaggat 1801 gatcaccaga tttctgtcaa agaaaaggat tattacccca aagattataa acagatgcaa 1861 cttacaggca tgcagatcct tttaaagctc tcctacgaca agaacaactt gttcctcatg 1921 agcaacacag atgatccggc cttgatcaac aagattgtgg cacttataac gtccaaggga 1981 tcacttcaca aaaaacaaca taacgaatgg tcctgtatgg cagagctcgg ggtgaagata 2041 ctaagccgat ttatgcgatt tatgtatggc cctacaaaat caaacaatat tctgtggcat 2101 gaaatatcaa caagcagcaa agcaatcggc accttggaga gtattcttga gtgtgaccaa 2161 tgtgactctg tgctgaagaa acacgccata aggattctca aaaggatatt catggataca 2221 tcttcggcta tgggtgaagg agacagagaa aggttcattg gctccttgat ggacatgtct 2281 cttcacaaca gtaatggtga ctttcaaaat ctggcaggtg tagatctggc gctcaagaaa 2341 caagggttaa gcattctcaa agaaatatac ttgaatccat cttcgattat gggcgaagga 2401 gacagagaaa ggttcatcgg ctccctgatg gacatgtttc ttgacaacag taagggcgac 2461 tttggaaatc tgccaggtga agatctggac ctcaagaaac aagagttaag tattctcaaa 2521 gaaatatgca tggatccatc ttcgtttatg ggcgaaggtg acagagaaaa attcatcggc 2581 accctgatgg acatgtttct tcacaacagc aagggcgact tgtttgaaaa actagcaggt 2641 gatgatctgg tgcagatatg tagaagaagt ggaagcagtg ccacgatcat attgaggaaa 2701 tatggtcatg atattgttga ttgtattgct gatactcgtt caagcgtata tagcagcatg 2761 cacagaaaaa ttgcagcaaa gatcctcaat catctgtgta gtccctactc cactgacgag 2821 gaacatcttc agaatctgaa ggaggccatc attgatttga tacccaaggt gctaagagaa 2881 gcacttggtt gggggttgac aggagaagag atactgcgag tggcagtttc aggccttgaa 2941 ggtacccaag atgatgactg gaaattgcag gaagcattgg cgtccctctg tgcaaccgtg 3001 tttaacagaa ttgtcagcaa ggatgcagat ttgactgctc ggttcaacaa catcgccgct 3061 ggtatctgcg accagacaac gaagcctcgc atgaccttcg cagacctcat caatgaagct 3121 gtaaaagttc atcgcatcga atttaaaaaa ccagaaaaac caaaaccagc tgccaggccg 3181 gaactgtacg agtttgtgac tgcgaaatac accccgcccc actttatgtt tttgggcgag 3241 gaagatccca acgcgtgttg tatctcttga taacacccta atttgtactt tctccgtttc 3301 acaatgtaag tcattctatt atttcctata tttatatgga tattaatgaa tctatatata 3361 tatatatata tatatttgtc tagatttatt aacatc //