LOCUS AK121304 3305 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023111F24, full insert
sequence.
ACCESSION AK121304
VERSION AK121304.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3305)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3305
/clone="J023111F24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 955..1731
/db_xref="Osa1:LOC_Os08g19610"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
cis-trans isomerase, cyclophilin-type family protein,
expressed"
/note="mapping to R08-TIGRv4S1-000413F (Chr.8: short
arm=11721880, long arm=11725183, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH00420.1"
/translation="MVLPSSNTRATSSMAYPVSLSSLHHHPNNHHAFFLPSKTNHDNT
HKPIESSRISRRSLIFLPVLPSLLYASSSPALDDANIPSTSAIDTTITDRIFMDFSVC
PSYFRSDRTLGAELATCPDSEPLGRVIFGLYGRLLPLTTANFKAACTSAAYRGTLVHK
LLQGQFFVAGRQGPRRDRGEVQPPTGLVRNAETIDPKAFELKHARPGTLSLCLGQNDD
DDDIKLNPNYHNVEFLVTTGPGPCPELDGQNIVFGTVLEG"
BASE COUNT 930 a 738 c 599 g 1038 t
ORIGIN
1 gagccggcac aattcccatg taaaagggat attgagataa gggcggagta atcgagtatc
61 gcgtaaaaga agaaatctcc cgtctcgttc tcgttctcct ccgctccttg cgccgccgcc
121 aagacgagcg gagggccggg cggcgatctc catctggcaa gcagagcagc ggaggggagg
181 aggggatcct ggtgcgtcct ctttctgatc catctctctc tctctctctc tctctctctc
241 ccaccccacc gggacctgga atttgcttgc gttcgtgaat ttgatagcct taaacctctc
301 ttatttcaag taataacagt ttgtttgttt acctaaaagt tcgggggttc aaccgaaccc
361 ccatgcccca agttggatcc gcccctggtt tgaattgctg aaacataatt tcgagctagt
421 taaacgaaga gacaacatgc ctggaaatgt aaaaaaaaag tatgctgatt tgaatttgat
481 tgttggaact gccctatagg aaactggtaa attttagaac aaaaaacctt gcttatagta
541 aaatcgtgaa tggatgatat gcaaagacat ggtgagaaat attcactcgc tcatactaca
601 actacttaag aggaccatat ttgctcactc tggaatagct gctgacctgc tgtgaccatc
661 atacaccccc tcgccgcaat gcaggttcca tttgaagtaa tcggagaatg gtatgttgag
721 aattagatta aagcttccat tttaaaattg taattgtttg ggctgtcagc tatttgccat
781 tattcacaag tgataattgt gaccctacaa cgaagaggct aacagtaggt tttagaattt
841 cagtaatgtt atatctcaaa agccaactat tacatttgca gggaaggata ttagtgattt
901 tctactgctg tttcgtcaga aggacaagaa ctgaagaatt cagttagcaa cagtatggtg
961 ttgccttcat caaataccag ggccacttct tccatggctt accctgtttc cctgagcagc
1021 ctccaccacc accccaacaa ccaccatgct ttttttcttc cctcgaaaac aaaccatgat
1081 aatactcata aacctattga atcctctaga atttctagac ggtctctcat cttcctccct
1141 gtcctccctt ctcttctata cgcttcatca tcccctgcct tagatgacgc aaacattcca
1201 tccacctctg ccattgatac caccatcaca gatcggatct tcatggactt cagtgtctgc
1261 cctagctact ttcgctctga ccgcacttta ggagctgagc ttgctacatg tcctgattct
1321 gaacctcttg gtcgtgtaat ttttggtttg tatggtcgac tcctccccct cactactgcc
1381 aacttcaaag ctgcttgcac ttctgctgca taccggggaa cacttgtcca caagctcctt
1441 cagggccagt tcttcgttgc tggccgccaa ggtcctcggc gtgacagggg cgaggtccaa
1501 cctcccaccg gacttgtgag gaatgctgag actattgacc ctaaagcatt tgaactaaag
1561 catgcaaggc ctggcaccct ctcattgtgc cttggacaga acgatgacga tgatgacatc
1621 aagctcaatc ctaattatca caatgttgaa ttcttggtta ccactggacc agggccctgc
1681 ccagagcttg atggacagaa cattgtcttt ggaactgtat tggaaggtta gttgctttca
1741 ttttctgaac ttttactaaa tggttcttgc acactttgtg ttaaattctg tcttgcaaga
1801 atttcaatgt ctttccctcg aacaagttgg gatttgacct gtgcgtaatc tactaatgca
1861 aggttggcat gattaaattc atgcataaat ctattttctt tggttcaaac agagaaaaat
1921 aaaatgtatt tcaaaccgtt tcattttttg tcaagtataa ttatatgaca tcttccattc
1981 tccttttggt atagttatat acacttgcta aggtaaacat gttttcattg aagtaatcaa
2041 cattagtaca taacagagaa gaaaaaaaaa tgcaaatttt gcagctttgc atgagtatta
2101 acaaaataac aaacagttgt gtccgtattc tggctaggac ttcatccatg cagaacataa
2161 agttagatgt tttattatta ccaatttctg caagtaatat aagcttgtaa agaaattgtc
2221 attttatttc ttcctttttg ttgtctcaac accaaggatg gttatcacac taagattaat
2281 tctttttttt ttcttctctg cacttcacca cagtataact catcatcaat tcctgccatg
2341 gtttgttcta acaatgtgcc acattgtcaa taaacaacac cagagagtgt atcatcctca
2401 tatagtcaaa tttggtgcat acttcattgt ttttccctgt tctgatttat tagatctctg
2461 gtggttatca gaagtagatt gaactaaacc aagcaactca tcaatgagat ttatactgcc
2521 actgaacatg tcaccccaaa agagaatcta cttctagcta atttaagact gacatgtctg
2581 ctttgacagt ttgatttgta atttaataaa ctttacaaca acaaccaggg cagtagttaa
2641 ctacaaagca gttcatattt aagttttatg catcaagaac ttaaaagcac ggcccttcta
2701 tccccaaaaa agcacatgcc cacgttctgc atctgcatgc ccatgcggca tgctctcatg
2761 cacatgcatg ggcagacgca acaaatgcat gcgcacatac aactatataa cttatattca
2821 catgacactt gaggcacact aatgcttgtc attaggaccc attgccactt gaagtgtaat
2881 agtgttactc atttgaactg aactagctac ttagtctcag tttcagtatt tgattattac
2941 caacagtttt ttcttaagca tccatttttc ttcttctata agcaactttg attgtcaagt
3001 tctgcattca catgcacaca taggcgacta aaacagactt tcaagcactg agttaaacaa
3061 gtgtattaat tggatatatt ccagtggaat tgacatgaag cttcaatttt gtacgagttg
3121 ctttctgttg tcttaatgga aactagtatt gccactgtat gattaatgat gatattgttg
3181 attcagatta acagaaagcg gctaattcga aagattttac atgataattt gtacatatgt
3241 aatttgtaac tattatatag ttttaatata tcgcagtagc agtctctcct gctgttttca
3301 tcgtc
//