LOCUS AK121257 2879 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023102I03, full insert
sequence.
ACCESSION AK121257
VERSION AK121257.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2879)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2879
/clone="J023102I03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 593..2794
/db_xref="Osa1:LOC_Os08g23130"
/db_xref="RAP-DB:Os08g0320200"
/note="(RAP Annotation release2) Tetrapeptide
transporter, OPT1/isp4 family protein"
/note="(Rice Genome Annotation Project) oligopeptide
transporter 5, putative, expressed"
/note="mapping to R08-TIGRv4S1-000403R (Chr.8: short
arm=13804749, long arm=13809222, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00400.1"
/translation="MEEEVNDHPIEEVRNTVPVTDDPSEPCLTFRVWVLGLSSCVFLA
FVNEFFMYRTTQLSIGTVVVQIITLPIGRLMASTLPARRLRVGGWSFSLNPGPFSLKE
HCLIIIFAGAGASGVYAMNIIAIVKVFYKRQISPYAAMLLAQTTQLLGYGWAGLFRKY
LVDSAYMWWPSNLVQVTLFRAMHEEEKRNKGQLTRLQFFIMVMTCSFAYYIVPSYLFP
AISTISVLCWLYRDSVTAQQIGSGASGLGVGSFGLDWNTVVGFLGNPLASPAFAIFNV
MAGFALSTYVAVPILYWTDTYNAKRFPLVSSHVFNAAGGRYDTARILDPATFTLNLRE
YDAYGRINLSILFAINYGIGFAGLMSTLSHVALYHGKDIWGLWRKATAEQANGGGKER
QDVHTRIMKRNYKAVPQWWFHLMLAIVMALSLYTCEGFGRQLQLPYWGLLLACAIAFT
FTLPIGVISATTNMQPGLNIITELIIGYLYPGKPLANVVFKTYGYISMTQALTFVSDF
KLGHYMKIPPRSMFMVQLAGTVVASTVHFATAWWLLTTVRNICDVDSLPLGSPWTCPG
EDVFYNASIIWGVVGPLRMFGRLGNYWQMNYFFLVGVLAPVPVWLLSRRYPRSALLRD
INLPLVLAGASGLLPARSVNFVMWGLVGFVFNHVVYRRCRAWWMRHNYVLAAGLDAGV
AFMGVLTFVSLGYFDIYGVQWWGGAADDHCPLASCPTAPGVFARGCPPVPS"
BASE COUNT 537 a 874 c 834 g 634 t
ORIGIN
1 gaggggagaa acaagcctac agatgatggc tcggtctatc ccgccggagt ccggtgacga
61 gaacgtctcg gcttctgccg atggtgtgta tgcctccttg ttcattctct gcatgaattg
121 cctttcctac actgggaatg caaatgaaat tctctcgtgg tagaagatcg aaattaagct
181 actagctagt ttctcttgga gaatgaaatc aacaacagtt ttcttccact tcccatttgt
241 tcgtgcaaaa ttgctgctaa aatatttaac gattttactc atgtttcttt ttttttcccc
301 aatggaatct gaacggctca gtgttgcttt gctaaaaaca tgagggtttg agaacttctc
361 tcgcaaagac atgcaggcgg cctattttag ggacagaaga tgacaaaaga acatcaagga
421 agagggcgta cgtgtagaga aagacggtga aatattttgc cagccagccg gccggccgga
481 gtccgacgat cgagcacatt ccgatggaca ctgcaggcgg tacaacaaac cacgcctaaa
541 acctccttta cttagttttg tgtgtgtgtg tgtgcgcact gcagaggagg gcatggagga
601 ggaggtgaac gaccacccga tcgaggaggt ccggaacacg gtgccggtga ccgacgaccc
661 gtcggagccg tgcctgacgt tccgggtgtg ggtgctgggg ctctcgtcgt gcgtgttcct
721 cgccttcgtc aacgagttct tcatgtaccg gaccacgcag ctgagcatcg gcacggtggt
781 ggtgcaaatc atcacgctgc ccatcggccg cctcatggcg tcgacgctgc cggcgaggcg
841 cctccgcgtc ggcggctggt ccttctccct caacccgggg cccttcagcc tcaaggagca
901 ttgcctcatc atcatcttcg ccggcgccgg cgccagcggc gtctatgcca tgaacatcat
961 cgccatcgtc aaggtgttct acaagcgcca gatcagcccc tacgccgcca tgctgctcgc
1021 ccagaccacc cagttgcttg ggtatggatg ggccggattg ttcaggaagt acctggttga
1081 ctcagcctac atgtggtggc cgtcaaacct cgtccaagtc accctcttca gggcgatgca
1141 cgaggaggag aagaggaaca aggggcagct gacgcggctg cagttcttca tcatggtgat
1201 gacgtgcagc ttcgcctact atatcgtacc cagctacctg ttcccggcga tcagcaccat
1261 ctcggtgctg tgctggctgt acagggactc ggtgacggcg cagcagatcg gctccggcgc
1321 ctcgggcctc ggcgtcggct ccttcggcct cgactggaac accgtggtgg gcttcctcgg
1381 caacccgctg gcgtcgccgg cgttcgccat cttcaacgtc atggccggct tcgcgctcag
1441 cacctacgtc gccgtgccga tcctctactg gaccgacacc tacaacgcca agcgcttccc
1501 gctcgtgtcg tcgcacgtct tcaacgccgc cggcggccgc tacgacaccg cccgcatcct
1561 cgacccggcc accttcacgc tcaacctcag ggagtacgac gcctacggcc gcatcaacct
1621 cagcatcctc ttcgccatca actacggcat cggcttcgcg ggcctcatgt ccacgctctc
1681 ccacgtcgcg ctctaccacg gcaaggacat ttggggcttg tggcggaagg caacggcgga
1741 gcaggcgaac ggcggcggca aggagcgcca agacgtgcac acgagaatca tgaagaggaa
1801 ctacaaggcc gtgccacagt ggtggtttca cttgatgctg gccatcgtga tggcattgtc
1861 gctgtacacc tgtgaggggt ttggccggca gcttcagctg ccatactggg gtctcctcct
1921 tgcctgtgcc atcgccttca ccttcacgtt gcccatcggc gtcatctctg ccacgaccaa
1981 catgcaacca gggttaaaca tcatcacaga gctcatcatc gggtacctgt acccggggaa
2041 gccattggcg aatgtggtgt tcaagaccta cggctacata agcatgactc aggcgctgac
2101 gtttgtgtcg gatttcaagc tggggcacta catgaagata ccgcccaggt ccatgttcat
2161 ggtgcagctg gcagggacgg tggtggcgtc gacggtgcac ttcgcgacgg cgtggtggct
2221 gctgacgacg gtgaggaaca tctgcgacgt ggacagcctg ccgctgggga gcccgtggac
2281 gtgccccggc gaggacgtct tctacaacgc ctccatcatc tggggcgtcg tcggaccgct
2341 ccggatgttt ggccgtctcg gcaactactg gcagatgaac tacttcttcc tcgtcggcgt
2401 cctcgcgccg gtgcccgtct ggctgctgtc gcgccggtac ccgcgcagcg cgttgctccg
2461 ggacatcaac ctgccgctcg tcctcgccgg cgccagcggg ctgctcccgg cgaggtccgt
2521 caacttcgtc atgtgggggc tcgtcgggtt cgtgttcaac cacgtcgtgt accgccggtg
2581 cagggcgtgg tggatgcggc ataactacgt gctcgccgcg gggctcgacg ccggcgtcgc
2641 cttcatgggc gtgctcacct tcgtctcgct aggatacttc gacatatacg gggtgcagtg
2701 gtggggtggc gccgccgatg atcactgccc cttggcgtcg tgccccacag cacctggggt
2761 gtttgccagg ggatgcccgc ctgtaccttc ttgattgatc aggacaccgc atctacatgt
2821 atatactcca tatgacagat ggttactcaa atgtatatat tatatcctct tgtcttcct
//