LOCUS AK121254 2337 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023102A19, full insert
sequence.
ACCESSION AK121254
VERSION AK121254.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2337)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2337
/clone="J023102A19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 369..2195
/db_xref="Osa1:LOC_Os03g07140"
/db_xref="RAP-DB:Os03g0167600"
/note="(RAP Annotation release2) Similar to Male
sterility protein 2"
/note="(Rice Genome Annotation Project) male sterility
protein 2, putative, expressed"
/note="mapping to R03-TIGRv4S1-000266F (Chr.3: short
arm=3632819, long arm=3636180, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH00399.1"
/translation="MGMSSCVNLSRVAAAAAGRRPGFAGELGGRRGHGRSVLPVVAAL
PVRRKGSGCGVACCVSSSSSSSVHGKNSAAAAEGHAGGIGIAEFLGGKNFLITGGTGF
LAKVLIEKILRTNPDVGKIYVLIKAKDGDAALKRLHNEVVDTELFSRLQEIHGKDYHS
FAARKLVPVVGDVREANVGIAPELAGVIADEVDIIVNSAANTTFDERYDVAMDINTVG
PFRIMSFAQRFRRLKLFLQVSTAYVNGQRQGVVLEKPFRLGDTIAKELGSPDSSQHKN
TMLDIEAEIKLAFDHRRHGDDSASFSEEMKELGLERAKLHGWQDTYVFTKAMGEMVIN
SMRGDIPVVTIRPSVIESTWRDPFPGWMEGNRMMDPVVLYYGKGQLSGFLADPEGVLD
VVPADMVVNATLASMAKHGRGGAAAAAAAAEGMHVYHVASSTVNPLAFGDLSRFLFQH
FTGSPYSDAAGRPIHVPPMRLFDTMEQFASYVETDALLRAGRLAGAGAGAGDERVSQR
LRELCAKSVEQTIYLGSIYQPYTFYGGRFDNGNTEALIGEMSEEEKARFHFDVRSIEW
TDYITNVHIPGLRKHVMKGRGVGGGSGASSSSNASLLAGASV"
BASE COUNT 484 a 621 c 747 g 485 t
ORIGIN
1 gatggcctcc tcctgcaatc tgcaagactg aagctaagca gctttaaatc ctcctgcgtc
61 atttaacccc ctctctgcct ctctgagctc tgagctgctc agctacagct ccctagctgt
121 tctgttcgat taattcagct tcgctttgct tggattaatt tgtaggtgac taactcgatc
181 acagctcagg tgattggcag tttgatcaca aggcaggaag gaagtagaag tagattgctg
241 tagcacacgc tcacctacca agcttctaca ctcgcagcca agctttgatc gtttgcttgc
301 tttgcattgc ttgggctttg tgggcaagaa cgtgtctatc ttcttcttgt tcgtctcgtc
361 aggcggccat ggggatgagt tcatgcgtga acctatcccg tgtcgccgcc gccgccgcag
421 ggagacggcc gggatttgcc ggtgagctgg gaggtcgccg tggtcatggc agaagcgtgc
481 ttccggttgt tgctgcactg ccggtgagga ggaagggaag cggttgtggc gtggcgtgct
541 gcgtctcctc ctcgtcttcc tcctccgtgc acggcaagaa ctcggcggcg gcggcggagg
601 gtcacgccgg cggcattggg atcgcggagt tcctcggcgg caagaacttc ctcatcaccg
661 gcggaaccgg gttcctggca aaagttctca tcgagaagat attgcggacg aatcccgacg
721 ttggcaagat ctacgtgctg atcaaggcga aggacggtga cgcagcactg aaaagattgc
781 acaacgaggt tgtggacaca gaattgttca gtcgtttgca ggaaatccat ggcaaggatt
841 accacagctt cgcggcaaga aagctggtgc ctgtagtcgg agatgtcaga gaagccaacg
901 ttggcatcgc ccctgagctt gccggcgtga tcgccgacga ggtcgacatc atcgtcaact
961 cagcagcaaa caccactttc gacgagaggt acgatgttgc aatggacatc aacaccgtag
1021 ggccattcag gataatgagc ttcgcgcagc ggtttcggag gctgaagctg ttcttgcaag
1081 tgtcaacagc atatgtgaac ggacagaggc aaggtgtggt gctagagaag ccatttcgct
1141 tgggggacac catagccaag gagttaggat ctccagattc ttcacaacac aagaacacca
1201 tgcttgacat cgaggcagag atcaagctgg cttttgacca caggagacac ggtgatgatt
1261 cagcctcttt ctctgaagaa atgaaagagt taggattaga gagggcaaaa ctccatgggt
1321 ggcaagatac atatgtgttc accaaggcca tgggagagat ggtgatcaac tccatgcgag
1381 gagatatacc ggttgtcacc atcaggccaa gcgtcatcga gagcacctgg agggatccct
1441 tccccggttg gatggaaggg aacaggatga tggatcctgt tgtgctgtac tacggcaaag
1501 gccagctgag cgggttcctc gctgacccgg agggtgttct tgacgtggtt ccggcggaca
1561 tggtggtgaa cgcaacgctg gcgtccatgg cgaagcacgg gcgcggcggc gcggcggcgg
1621 cggcggcggc ggcggagggg atgcacgtgt accacgtggc gtcgtcgacg gtgaacccgc
1681 tggcgttcgg cgacctgagc cggttcctct tccagcactt cacggggtcg ccgtacagcg
1741 acgcggcggg gcggcccatc cacgtgccgc cgatgcggct gttcgacacc atggagcagt
1801 tcgccagcta cgtcgagacc gacgcgctgc tgcgcgccgg ccgcctcgcc ggcgccggcg
1861 ccggcgccgg agacgagagg gtgtcgcagc ggctgcgcga gctctgcgcc aagtccgtcg
1921 agcagaccat ctacctcggc agcatctacc agccctacac cttctacggc ggcaggttcg
1981 acaatgggaa cacggaggcg ctgatcgggg agatgtcgga ggaggagaag gcgcggttcc
2041 acttcgacgt gaggagcatc gagtggacgg actacatcac caacgtgcac atcccggggc
2101 tcaggaagca cgtcatgaag gggaggggcg tcggcggcgg cagcggcgcg tcgtcgtcat
2161 cgaacgcctc gctgctcgcc ggcgcctccg tttgaatggc caggccggcg ccggagaaga
2221 ggaggatgca tgcgcggcgt gtacactagg ctagattgtt gttaacttgt tctgccgtgg
2281 cagtctgaca gatgatcttt gtgctgcagt aattaaggtt gatagtatgt tatctct
//