LOCUS AK121211 2651 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023089G09, full insert
sequence.
ACCESSION AK121211
VERSION AK121211.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2651)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2651
/clone="J023089G09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 140..2419
/db_xref="Osa1:LOC_Os02g04710"
/db_xref="RAP-DB:Os02g0139700"
/note="(RAP Annotation release2) Similar to Cycloartenol
synthase"
/note="(Rice Genome Annotation Project) cycloartenol
synthase, putative, expressed"
/note="mapping to R02-TIGRv4S1-000137R (Chr.2: short
arm=2128428, long arm=2137095, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00370.1"
/translation="MWRLRVAEGGGDPWLRTKNGHVGRQVWEFDPAAGDPDELAAVEA
ARRGFAARRHELKHSSDLLMRMQFAKANPLKLDIPAIKLEEHEAVTGEAVLSSLKRAI
ARYSTFQAHDGHWPGDYGGPMFLMPGLIITLYVSGALNTALSSEHQKEIRRYLYNHQN
EDGGWGLHIEGHSTMFGSALTYVSLRLLGEGPDSGDGAMEKGRKWILDHGGATYITSW
GKFWLSVLGVFDWSGNNPVPPEIWLLPYFLPIHPGRMWCHCRMVYLPMCYIYGKRFVG
PVTPIILELRKELYEVPYNEVDWDKARNLCAKEDLYYPHPFVQDVLWATLHKFVEPAM
LRWPGNKLREKALDTVMQHIHYEDENTRYICIGPVNKVLNMLACWIEDPNSEAFKLHI
PRVHDYLWIAEDGMKMQGYNGSQLWDTAFTVQAIVATGLIEEFGPTLKLAHGYIKKTQ
VIDDCPGDLSQWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKISPDIVGEAV
EVNRLYDSVNCLMSYMNDNGGFATYELTRSYAWLELINPAETFGDIVIDYPYVECTSA
AIQALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWYGSWAVCFTYGTWFGVK
GLVAAGRTFKNSPAIRKACDFLLSKELPSGGWGESYLSSQDQVYTNLEGKRPHAVNTG
WAMLALIDAGQAERDPIPLHRAAKVLINLQSEDGEFPQQEIIGVFNKNCMISYSEYRN
IFPIWALGEYRRRVLAADK"
BASE COUNT 685 a 566 c 707 g 693 t
ORIGIN
1 gaacgcggcg gtatctcgtg ctcgtgcgcc gccccgcgct cccgatcgat tcgctctctc
61 gccgccgccg ccgcagctga cgccgtcgat ttggttggtt ggttgatcgg cggcgaggag
121 ggggaggggg ggggggagga tgtggcggct gagggtggcg gagggcgggg gggacccgtg
181 gctgcgcacg aagaacggcc acgtggggcg ccaggtctgg gagttcgacc ccgccgcggg
241 cgaccccgac gagctcgccg ccgtcgaggc cgcccgccgc ggtttcgccg cccgccgcca
301 cgagctcaag cacagctccg acctcctcat gcgcatgcag tttgctaaag caaatcctct
361 taagctggac attccagcta tcaagctaga ggagcatgaa gctgttacag gcgaagctgt
421 attatcctct ctaaaaaggg caattgctcg ttattctact tttcaagcac atgatggaca
481 ctggcctggg gattatggtg gtcccatgtt ccttatgcca ggcttgatta taacattata
541 tgtgagcgga gcgctgaaca ctgctttgtc atctgaacat cagaaggaga tacggcggta
601 tctctacaat catcagaatg aagatggagg atggggtttg cacattgagg gccacagcac
661 catgtttggc tcagcgttga catatgtttc tttgagattg cttggggagg ggccagatag
721 cggcgatgga gctatggaga aaggacgaaa atggatttta gaccatgggg gagcaactta
781 tattacatca tggggcaagt tttggctttc ggtgcttggt gtatttgact ggtctggcaa
841 caacccagtg ccaccagaaa tatggttgtt gccatatttc ctgccgattc atccagggcg
901 aatgtggtgt cattgccgga tggtttattt gcctatgtgt tacatttatg gaaagaggtt
961 tgtgggccca gttacaccaa ttatattgga attaagaaag gaactctacg aagtacccta
1021 caatgaagtt gattgggaca aggctcgcaa tctatgtgct aaggaagatc tgtactatcc
1081 acatccattc gtgcaggatg tattatgggc cactctccac aaatttgttg aaccagctat
1141 gttgcgttgg cctgggaaca aattgaggga gaaagctttg gacactgtca tgcagcatat
1201 tcattatgaa gatgagaaca cccgatatat ttgcattggt ccagtaaaca aggtattaaa
1261 tatgcttgct tgctggattg aagatccaaa ctcagaggca ttcaaactcc acattccaag
1321 agtccacgat tacctatgga ttgcagaaga tggcatgaaa atgcagggtt ataatggaag
1381 ccagctgtgg gacacagctt tcacagttca agctatagtg gctactggcc tcattgaaga
1441 atttggtcct actcttaaac tagcacatgg ctacataaag aaaacgcagg ttatcgatga
1501 ctgccctgga gatcttagtc agtggtaccg ccacatatct aaaggtgcat ggcccttttc
1561 tactgctgat catggttggc ctatatcaga ttgcactgca gaaggactta aggcggcatt
1621 attgctatcg aagatttctc cagatattgt tggcgaagca gtggaagtta atagactgta
1681 tgattctgtc aattgtttga tgtcatacat gaatgataat ggtggatttg caacatatga
1741 actcacaagg tcttatgcct ggctggagct tatcaatcct gctgagacct ttggggacat
1801 tgtgattgat tatccttatg tggaatgcac ttcagcagca attcaggccc tgacagcatt
1861 taaaaagctc taccctggac accgcaagag tgaaatagac aactgtataa gcaaagctgc
1921 tagctttatt gagggtattc aaaaaagcga tggttcatgg tatggttctt gggctgtttg
1981 ttttacctat ggcacatggt ttggtgtaaa gggattagtt gctgctggta ggacattcaa
2041 aaacagtcct gcaatcagaa aggcatgtga ctttttgttg tcaaaagagc ttccttctgg
2101 aggctgggga gaaagctatt tgtcatccca agatcaggtt tataccaatc tcgaagggaa
2161 gcgacctcat gcggtgaaca ctggttgggc catgctagcc ctaatcgatg cagggcaggc
2221 tgagagagat ccaattcctt tgcatcgagc agcgaaggtt ttgatcaact tacaatcgga
2281 agatggtgaa tttccccagc aagagatcat tggagtcttc aacaaaaact gcatgatcag
2341 ctactccgag tatagaaaca tcttccctat ttgggccctt ggggagtacc gtcgccgcgt
2401 cttggccgca gacaagtagt tcagcacgag cagagcagca gcaccaacaa tgtgcatgta
2461 tttatacgtg aaataatgta gctatgtttc agttgtaata atgtggctat atgtattctc
2521 ccgttagtga tgccacgcga gcgtagtcaa atagaaacgc attttgacac aagttcgaga
2581 tgaatggatt cctgaatcga atgtttgtgt tcagatagaa ttcttgccac gcaaaataca
2641 aacatgaaag t
//