LOCUS AK121182 4317 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023084H11, full insert sequence. ACCESSION AK121182 VERSION AK121182.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 4317) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..4317 /clone="J023084H11" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 546..4049 /db_xref="Osa1:LOC_Os06g36090" /db_xref="RAP-DB:Os06g0554800" /note="(RAP Annotation release2) Similar to ABC transporter (PDR5-like) isolog (PDR1 ABC transporter)" /note="(Rice Genome Annotation Project) ATPase, coupled to transmembrane movement of substances, putative, expressed" /note="mapping to R06-TIGRv4S1-000777R (Chr.6: short arm=21112236, long arm=21119652, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAH00354.1" /translation="MILGLDICADTIVGDQMQRGISGGQKKRVTTGEMIVGPTKVLFM DEISTGLDSSTTFQIVKCLQQIVHLGEATILMSLLQPAPETFELFDDIILLSEGQIVY QGPREYVLEFFESCGFRCPERKGTADFLQEVTSKKDQEQYWADKHRPYRYISVSEFAQ RFKRFHVGLQLENHLSVPFDKTRSHQAALVFSKQSVSTTELLKASFAKEWLLIKRNSF VYIFKTIQLIIVALVASTVFLRTQMHTRNLDDGFVYIGALLFSLIVNMFNGFAELSLT ITRLPVFFKHRDLLFYPAWIFTLPNVILRIPFSIIESIVWVIVTYYTIGFAPEADRFF KQLLLVFLIQQMAGGLFRATAGLCRSMIIAQTGGALALLIFFVLGGFLLPKAFIPKWW IWGYWVSPLMYGYNALAVNEFYSPRWMNKFVLDNNGVPKRLGIALMEGANIFTDKNWF WIGAAGLLGFTMFFNVLFTLSLVYLNPLGKPQAVISEETAKEAEGNGDARHTVRNGST KSNGGNHKEMREMRLSARLSNSSSNGVSRLMSIGSNEAGPRRGMVLPFTPLSMSFDDV NYYVDMPAEMKQQGVVDDRLQLLRDVTGSFRPAVLTALMGVSGAGKTTLMDVLAGRKT GGYIEGDMRISGYPKNQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPEKIGDQ EITDDIKIQFVDEVMELVELDNLKDALVGLPGITGLSTEQRKRLTIAVELVANPSIIF MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI YSGQLGRNSQKMIEYFEAIPGVPKIKDKYNPATWMLEVSSVAAEVRLNMDFAEYYKTS DLYKQNKVLVNQLSQPEPGTSDLHFPTKYSQSTIGQFRACLWKQWLTYWRSPDYNLVR FSFTLFTALLLGTIFWKIGTKMGNANSLRMVIGAMYTAVMFIGINNCATVQPIVSIER TVFYRERAAGMYSAMPYAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFF VSYFSFLYFTYYGMMTVAISPNHEVAAIFAAAFYSLFNLFSGFFIPRPRIPKWWIWYY WLCPLAWTVYGLIVTQYGDLEQIISVPGQSNQTISYYVTHHFGYHRKFMPVVAPVLVL FAVFFAFMYAICIKKLNFQHR" BASE COUNT 1121 a 952 c 1002 g 1242 t ORIGIN 1 gtaatcatat aggacttggt tgcacatttg tccacaagca aacaactagt actaaccatg 61 acccaggttg gtgaacactg cacaccaaat gggaaaaggg gaattttttt ttcttttttt 121 tttcaaggat ccaatcaacc accaagtcca ctactatgat tcttgggcac atacttctcc 181 tactgattag tagcagcagc agcagcaggc aggagggagt gggtttgttt gctgactctc 241 ttgtgtcttg accacaaagg atggttcttt cttccctctt cttcttcctc cctcctcctc 301 acctactgct aattgggaga tggagctcga attgagttct tggtggggca tccttgtagc 361 tttgggaggg gggattgggg ggttggtgca cccacttggc ctggtggaaa tggcgcgcac 421 ccgtggtgat gatgcccacc acatgtttgt tgatatgccc agccaaagct tctgcttctt 481 atcagcttta ctgcgagttt ccgagcactg gccacgtagt aacataatta cattgggcag 541 gatggatgat actgggattg gatatatgcg cggacacgat cgtcggcgac cagatgcaga 601 gggggatctc cggtggtcag aagaaacgcg tcaccaccgg tgagatgatt gtcggtccaa 661 caaaggttct attcatggat gagatatcaa ctggattgga cagctccacc acattccaga 721 ttgtcaaatg ccttcagcaa atcgtgcact tgggcgaggc aaccatcctc atgtcactcc 781 tacaaccagc ccctgagact tttgagctat tcgatgacat tatcctactg tcagaaggcc 841 agattgttta tcagggaccc cgcgaatacg tccttgagtt ctttgagtca tgcggattcc 901 gctgcccaga gcgtaagggt actgcagact ttcttcagga ggtgacatca aagaaggatc 961 aggagcagta ttgggccgac aagcataggc catacagata catttcagtc tcagaatttg 1021 cacagagatt taaaaggttc catgttgggc tccaacttga gaatcatctc tcagtcccat 1081 ttgataaaac tcgtagccat caggctgctc ttgtcttctc gaagcaatcg gtgtcaacaa 1141 cagagctcct caaggcatcc tttgccaagg agtggctcct cattaagcgc aactcatttg 1201 tgtacatctt caagaccata cagctcatca ttgtagccct tgtcgcgtcg acagtgtttc 1261 ttaggaccca gatgcacaca aggaatttag atgatggctt tgtgtacatt ggagcactac 1321 ttttcagtct gattgtgaac atgttcaatg gtttcgctga gctctctttg accatcacaa 1381 ggttgccagt gttcttcaag caccgggacc tcctcttcta ccctgcttgg atcttcactc 1441 taccgaatgt tattctgaga atcccatttt ccatcatcga atctatagtc tgggtgattg 1501 ttacatacta cactatagga tttgccccag aggctgacag atttttcaag cagttgctgc 1561 tagtgttctt gatccagcag atggcaggtg gccttttcag agcaactgct ggtctgtgca 1621 gatccatgat cattgctcaa actggaggag ccctggccct tctcatattt ttcgttcttg 1681 gaggatttct tctgccaaaa gcattcatcc caaaatggtg gatctggggt tactgggttt 1741 caccactgat gtacgggtat aatgctctag cagtcaatga attctactct cctcggtgga 1801 tgaacaagtt tgtactggat aacaatggcg ttcctaaaag actaggaata gctctgatgg 1861 aaggtgccaa catcttcact gacaaaaatt ggttctggat tggagcagca gggctcctgg 1921 gtttcaccat gtttttcaat gtgcttttca ctctgtcact cgtttatctg aatcctctgg 1981 gcaaaccaca agctgtcata tctgaagaaa ctgcgaagga agcggaaggc aatggggatg 2041 caagacatac agtaagaaat ggcagcacaa aatcaaatgg tggaaatcac aaagaaatga 2101 gggagatgag attgagtgct cgtctgagca atagttcatc gaatggagtt tcacgactga 2161 tgtccattgg tagcaatgaa gctggtccaa gaagaggaat ggttcttcca tttactcctc 2221 tatccatgtc ttttgatgat gtgaactact atgtcgacat gcctgcagaa atgaagcagc 2281 aaggagtggt ggatgatagg ctccaattgt tacgtgacgt tactggatca tttaggcctg 2341 cagtgctgac agcactcatg ggagtcagtg gagccggaaa gacaactctt atggatgttt 2401 tggcaggaag aaagactggt ggttacattg aaggagatat gagaatttct ggttatccta 2461 agaaccaaga aacatttgca agaatttctg gctactgtga gcaaaacgat atccattcac 2521 ctcaggtcac agttagggag tctttgatat actctgcttt cctgcgcctt ccagaaaaaa 2581 taggagatca agaaatcact gatgatatca agattcaatt tgttgatgaa gttatggaac 2641 tagtggagct cgacaatctg aaggatgcgt tagttggcct gcctggaatc acagggcttt 2701 caacagagca aaggaagaga ttgacaatag cagtggagct tgttgcaaat ccctcgatca 2761 tcttcatgga tgaaccgact tcaggtcttg atgcaagagc agcagccatt gttatgagaa 2821 cagtgaggaa cacagttgac actggacgga cagtggtttg cacaattcac cagccaagca 2881 ttgacatatt tgaggctttt gatgagctgc tactactgaa aagaggaggg caggtgatat 2941 actctgggca attgggtcgt aattcccaga aaatgattga atatttcgag gcaattcctg 3001 gtgtgcctaa aatcaaagat aagtacaatc cagctacatg gatgcttgag gtcagttcag 3061 ttgctgcgga agtacgctta aatatggact ttgctgagta ctataagaca tcagacctgt 3121 acaagcaaaa caaggtattg gtgaatcagc taagtcaacc agagccagga acatcagatc 3181 tgcattttcc tacaaaatac tctcaatcca ccatagggca atttagggcc tgcctctgga 3241 agcaatggct gacctattgg cgcagcccag attacaatct tgttagattt tccttcactc 3301 tgttcacagc cttgctactc ggcaccatct tttggaagat cggcaccaag atgggaaatg 3361 ccaattctct tagaatggtc attggagcaa tgtatacagc agtgatgttt atcggtatca 3421 acaattgtgc gactgtgcag ccaatcgtgt cgattgagag aacagttttc taccgagaga 3481 gggctgctgg gatgtactct gctatgccct atgccattgc tcaggttgtc atggagatac 3541 cctatgtgtt cgtccaaact gcatattata ccctcattgt ttatgccatg atgagcttcc 3601 agtggacagc agccaagttc ttctggttct tcttcgtctc ctacttctca tttctctact 3661 tcacctacta tggtatgatg acggtggcaa tctcaccaaa ccatgaggtt gcagccatct 3721 ttgccgcggc gttctattcc ttgttcaacc tattctcagg attcttcatt ccgagaccaa 3781 ggattcccaa atggtggatc tggtactact ggctttgccc attggcatgg acagtgtatg 3841 ggctcatagt gacacagtat ggagacctag aacaaatcat ctcagtccct ggccaatcca 3901 accagacaat cagctactat gttactcatc attttggata tcacaggaaa tttatgccag 3961 ttgttgcgcc ggtgctcgtg ctcttcgctg tgtttttcgc gttcatgtat gccatttgca 4021 tcaagaagtt gaacttccaa catcgatagg ggcattgaaa caacaggcaa aatctggttg 4081 gaaacttttt tttggttttg aaccaaatct tcttttgtcc tttccccaca gataatatct 4141 tcttttatcc tcacattttt gtggtctata tatgccatgt aaatatgctg gtaggttttc 4201 tgtattccat acatcgccaa atgtggcgag gtttcatatg accttttagc tttggaaatg 4261 taaactttat aagagcattg ttgtcagaaa ttttgttcgt ggcctattct tccattg //