LOCUS       AK121182                4317 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023084H11, full insert
            sequence.
ACCESSION   AK121182
VERSION     AK121182.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 4317)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Collection, mapping, and annotation of 28K full-length cDNA clones
            from japonica rice
  JOURNAL   Unpublished (2003)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..4317
                     /clone="J023084H11"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             546..4049
                     /db_xref="Osa1:LOC_Os06g36090"
                     /db_xref="RAP-DB:Os06g0554800"
                     /note="(RAP Annotation release2) Similar to ABC
                     transporter (PDR5-like) isolog (PDR1 ABC transporter)"
                     /note="(Rice Genome Annotation Project) ATPase, coupled
                     to transmembrane movement of substances, putative,
                     expressed"
                     /note="mapping to R06-TIGRv4S1-000777R (Chr.6: short
                     arm=21112236, long arm=21119652, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAH00354.1"
                     /translation="MILGLDICADTIVGDQMQRGISGGQKKRVTTGEMIVGPTKVLFM
                     DEISTGLDSSTTFQIVKCLQQIVHLGEATILMSLLQPAPETFELFDDIILLSEGQIVY
                     QGPREYVLEFFESCGFRCPERKGTADFLQEVTSKKDQEQYWADKHRPYRYISVSEFAQ
                     RFKRFHVGLQLENHLSVPFDKTRSHQAALVFSKQSVSTTELLKASFAKEWLLIKRNSF
                     VYIFKTIQLIIVALVASTVFLRTQMHTRNLDDGFVYIGALLFSLIVNMFNGFAELSLT
                     ITRLPVFFKHRDLLFYPAWIFTLPNVILRIPFSIIESIVWVIVTYYTIGFAPEADRFF
                     KQLLLVFLIQQMAGGLFRATAGLCRSMIIAQTGGALALLIFFVLGGFLLPKAFIPKWW
                     IWGYWVSPLMYGYNALAVNEFYSPRWMNKFVLDNNGVPKRLGIALMEGANIFTDKNWF
                     WIGAAGLLGFTMFFNVLFTLSLVYLNPLGKPQAVISEETAKEAEGNGDARHTVRNGST
                     KSNGGNHKEMREMRLSARLSNSSSNGVSRLMSIGSNEAGPRRGMVLPFTPLSMSFDDV
                     NYYVDMPAEMKQQGVVDDRLQLLRDVTGSFRPAVLTALMGVSGAGKTTLMDVLAGRKT
                     GGYIEGDMRISGYPKNQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPEKIGDQ
                     EITDDIKIQFVDEVMELVELDNLKDALVGLPGITGLSTEQRKRLTIAVELVANPSIIF
                     MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI
                     YSGQLGRNSQKMIEYFEAIPGVPKIKDKYNPATWMLEVSSVAAEVRLNMDFAEYYKTS
                     DLYKQNKVLVNQLSQPEPGTSDLHFPTKYSQSTIGQFRACLWKQWLTYWRSPDYNLVR
                     FSFTLFTALLLGTIFWKIGTKMGNANSLRMVIGAMYTAVMFIGINNCATVQPIVSIER
                     TVFYRERAAGMYSAMPYAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFF
                     VSYFSFLYFTYYGMMTVAISPNHEVAAIFAAAFYSLFNLFSGFFIPRPRIPKWWIWYY
                     WLCPLAWTVYGLIVTQYGDLEQIISVPGQSNQTISYYVTHHFGYHRKFMPVVAPVLVL
                     FAVFFAFMYAICIKKLNFQHR"
BASE COUNT         1121 a          952 c         1002 g         1242 t
ORIGIN      
        1 gtaatcatat aggacttggt tgcacatttg tccacaagca aacaactagt actaaccatg
       61 acccaggttg gtgaacactg cacaccaaat gggaaaaggg gaattttttt ttcttttttt
      121 tttcaaggat ccaatcaacc accaagtcca ctactatgat tcttgggcac atacttctcc
      181 tactgattag tagcagcagc agcagcaggc aggagggagt gggtttgttt gctgactctc
      241 ttgtgtcttg accacaaagg atggttcttt cttccctctt cttcttcctc cctcctcctc
      301 acctactgct aattgggaga tggagctcga attgagttct tggtggggca tccttgtagc
      361 tttgggaggg gggattgggg ggttggtgca cccacttggc ctggtggaaa tggcgcgcac
      421 ccgtggtgat gatgcccacc acatgtttgt tgatatgccc agccaaagct tctgcttctt
      481 atcagcttta ctgcgagttt ccgagcactg gccacgtagt aacataatta cattgggcag
      541 gatggatgat actgggattg gatatatgcg cggacacgat cgtcggcgac cagatgcaga
      601 gggggatctc cggtggtcag aagaaacgcg tcaccaccgg tgagatgatt gtcggtccaa
      661 caaaggttct attcatggat gagatatcaa ctggattgga cagctccacc acattccaga
      721 ttgtcaaatg ccttcagcaa atcgtgcact tgggcgaggc aaccatcctc atgtcactcc
      781 tacaaccagc ccctgagact tttgagctat tcgatgacat tatcctactg tcagaaggcc
      841 agattgttta tcagggaccc cgcgaatacg tccttgagtt ctttgagtca tgcggattcc
      901 gctgcccaga gcgtaagggt actgcagact ttcttcagga ggtgacatca aagaaggatc
      961 aggagcagta ttgggccgac aagcataggc catacagata catttcagtc tcagaatttg
     1021 cacagagatt taaaaggttc catgttgggc tccaacttga gaatcatctc tcagtcccat
     1081 ttgataaaac tcgtagccat caggctgctc ttgtcttctc gaagcaatcg gtgtcaacaa
     1141 cagagctcct caaggcatcc tttgccaagg agtggctcct cattaagcgc aactcatttg
     1201 tgtacatctt caagaccata cagctcatca ttgtagccct tgtcgcgtcg acagtgtttc
     1261 ttaggaccca gatgcacaca aggaatttag atgatggctt tgtgtacatt ggagcactac
     1321 ttttcagtct gattgtgaac atgttcaatg gtttcgctga gctctctttg accatcacaa
     1381 ggttgccagt gttcttcaag caccgggacc tcctcttcta ccctgcttgg atcttcactc
     1441 taccgaatgt tattctgaga atcccatttt ccatcatcga atctatagtc tgggtgattg
     1501 ttacatacta cactatagga tttgccccag aggctgacag atttttcaag cagttgctgc
     1561 tagtgttctt gatccagcag atggcaggtg gccttttcag agcaactgct ggtctgtgca
     1621 gatccatgat cattgctcaa actggaggag ccctggccct tctcatattt ttcgttcttg
     1681 gaggatttct tctgccaaaa gcattcatcc caaaatggtg gatctggggt tactgggttt
     1741 caccactgat gtacgggtat aatgctctag cagtcaatga attctactct cctcggtgga
     1801 tgaacaagtt tgtactggat aacaatggcg ttcctaaaag actaggaata gctctgatgg
     1861 aaggtgccaa catcttcact gacaaaaatt ggttctggat tggagcagca gggctcctgg
     1921 gtttcaccat gtttttcaat gtgcttttca ctctgtcact cgtttatctg aatcctctgg
     1981 gcaaaccaca agctgtcata tctgaagaaa ctgcgaagga agcggaaggc aatggggatg
     2041 caagacatac agtaagaaat ggcagcacaa aatcaaatgg tggaaatcac aaagaaatga
     2101 gggagatgag attgagtgct cgtctgagca atagttcatc gaatggagtt tcacgactga
     2161 tgtccattgg tagcaatgaa gctggtccaa gaagaggaat ggttcttcca tttactcctc
     2221 tatccatgtc ttttgatgat gtgaactact atgtcgacat gcctgcagaa atgaagcagc
     2281 aaggagtggt ggatgatagg ctccaattgt tacgtgacgt tactggatca tttaggcctg
     2341 cagtgctgac agcactcatg ggagtcagtg gagccggaaa gacaactctt atggatgttt
     2401 tggcaggaag aaagactggt ggttacattg aaggagatat gagaatttct ggttatccta
     2461 agaaccaaga aacatttgca agaatttctg gctactgtga gcaaaacgat atccattcac
     2521 ctcaggtcac agttagggag tctttgatat actctgcttt cctgcgcctt ccagaaaaaa
     2581 taggagatca agaaatcact gatgatatca agattcaatt tgttgatgaa gttatggaac
     2641 tagtggagct cgacaatctg aaggatgcgt tagttggcct gcctggaatc acagggcttt
     2701 caacagagca aaggaagaga ttgacaatag cagtggagct tgttgcaaat ccctcgatca
     2761 tcttcatgga tgaaccgact tcaggtcttg atgcaagagc agcagccatt gttatgagaa
     2821 cagtgaggaa cacagttgac actggacgga cagtggtttg cacaattcac cagccaagca
     2881 ttgacatatt tgaggctttt gatgagctgc tactactgaa aagaggaggg caggtgatat
     2941 actctgggca attgggtcgt aattcccaga aaatgattga atatttcgag gcaattcctg
     3001 gtgtgcctaa aatcaaagat aagtacaatc cagctacatg gatgcttgag gtcagttcag
     3061 ttgctgcgga agtacgctta aatatggact ttgctgagta ctataagaca tcagacctgt
     3121 acaagcaaaa caaggtattg gtgaatcagc taagtcaacc agagccagga acatcagatc
     3181 tgcattttcc tacaaaatac tctcaatcca ccatagggca atttagggcc tgcctctgga
     3241 agcaatggct gacctattgg cgcagcccag attacaatct tgttagattt tccttcactc
     3301 tgttcacagc cttgctactc ggcaccatct tttggaagat cggcaccaag atgggaaatg
     3361 ccaattctct tagaatggtc attggagcaa tgtatacagc agtgatgttt atcggtatca
     3421 acaattgtgc gactgtgcag ccaatcgtgt cgattgagag aacagttttc taccgagaga
     3481 gggctgctgg gatgtactct gctatgccct atgccattgc tcaggttgtc atggagatac
     3541 cctatgtgtt cgtccaaact gcatattata ccctcattgt ttatgccatg atgagcttcc
     3601 agtggacagc agccaagttc ttctggttct tcttcgtctc ctacttctca tttctctact
     3661 tcacctacta tggtatgatg acggtggcaa tctcaccaaa ccatgaggtt gcagccatct
     3721 ttgccgcggc gttctattcc ttgttcaacc tattctcagg attcttcatt ccgagaccaa
     3781 ggattcccaa atggtggatc tggtactact ggctttgccc attggcatgg acagtgtatg
     3841 ggctcatagt gacacagtat ggagacctag aacaaatcat ctcagtccct ggccaatcca
     3901 accagacaat cagctactat gttactcatc attttggata tcacaggaaa tttatgccag
     3961 ttgttgcgcc ggtgctcgtg ctcttcgctg tgtttttcgc gttcatgtat gccatttgca
     4021 tcaagaagtt gaacttccaa catcgatagg ggcattgaaa caacaggcaa aatctggttg
     4081 gaaacttttt tttggttttg aaccaaatct tcttttgtcc tttccccaca gataatatct
     4141 tcttttatcc tcacattttt gtggtctata tatgccatgt aaatatgctg gtaggttttc
     4201 tgtattccat acatcgccaa atgtggcgag gtttcatatg accttttagc tttggaaatg
     4261 taaactttat aagagcattg ttgtcagaaa ttttgttcgt ggcctattct tccattg
//