LOCUS       AK121154                1956 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023078O05, full insert
            sequence.
ACCESSION   AK121154
VERSION     AK121154.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Collection, mapping, and annotation of 28K full-length cDNA clones
            from japonica rice
  JOURNAL   Unpublished (2003)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1956
                     /clone="J023078O05"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             64..1518
                     /db_xref="Osa1:LOC_Os03g14540"
                     /db_xref="RAP-DB:Os03g0249500"
                     /note="(RAP Annotation release2) Similar to Nucleotide
                     sugar epimerase-like protein (UDP-D-glucuronate 4-
                     epimerase) (EC 5.1.3.6)"
                     /note="(Rice Genome Annotation Project) expressed protein"
                     /note="mapping to R03-TIGRv4S1-000521F (Chr.3: short
                     arm=7868390, long arm=7870345, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAH00344.1"
                     /translation="MAPQLTGAPGTAGAAGGAASVKPQFHHFHHHRLATRHHHPSPTS
                     LLSKLAFWSVCSLSLLLAFLLLSPSAAPAPRAAPDSPRRSLHTSSPSAAATWGGAAWE
                     KKVRASARVRRANGRGLTVLVTGAAGFVGCHAAAALRRRGDGVLGLDNFNDYYDPALK
                     RGRAALLARSGVYVVDGDIADAELLAKLFDVVPFTHVLHLAAQAGVRHALVDPMSYVR
                     ANVGGFVALLEAARMANPQPAIVWASSSSVYGLNSHVPFSEHDRTDRPASLYAATKKA
                     GEEIAHAYNHIYGLSLTALRFFTVYGPWGRPDMAYFFFTRDILAGRPITVYESAGGGT
                     HQTTISRDFTYIDDIVKGCVGALDTAGRSTGSGGKKRGPAPFRTYNLGNTSPVPVTQL
                     VDLLEKLLKVKAVRKIVKMPRNGDVPYTHANISLAQRELGYRPSTDLQTGVKKFVRWY
                     LEYYMPGFAGKQKQHGSSNSKSSRGRSGNTSSAR"
BASE COUNT          367 a          606 c          557 g          426 t
ORIGIN      
        1 gaaccccacc caaattcgcg agatccgacg aggagctcaa tccacattgc ggcagatcgg
       61 gagatggcgc cgcagctgac cggcgcgccc ggcacggcgg gggcggcggg cggcgcggcg
      121 tccgtcaagc cgcagttcca ccacttccac caccaccgcc tcgccacgcg ccaccaccac
      181 ccctcgccga cctcgctcct ctccaagctc gccttctggt ccgtctgctc cctctcgctc
      241 ctcctcgcct tcctcctcct ctccccctcc gccgcgccgg ccccgcgggc ggcgcccgac
      301 tccccgcgcc gctccctcca cacgtcctcc ccgtccgccg ccgccacgtg gggcggcgcc
      361 gcatgggaga agaaggtgcg ggcgtccgcg cgcgtcaggc gggccaacgg gcgggggctc
      421 accgtcctcg tcacgggcgc cgcgggcttc gtcggctgcc acgcggccgc cgccctccgc
      481 cgccgcggcg acggcgtgct tgggctggac aacttcaacg actactacga ccccgccctc
      541 aagcggggcc gcgccgcgct cctcgcccgc tcgggggtct acgtcgtcga cggcgacatc
      601 gccgatgcgg agctcctcgc caagctgttc gacgtcgtgc cgttcaccca cgtcctccac
      661 ctcgccgctc aggcgggcgt tcggcacgcg ctcgttgacc cgatgtccta cgtgcgcgcc
      721 aacgtcggcg ggttcgtggc gctgctcgag gcggcgcgca tggcgaatcc ccagccggcg
      781 atcgtctggg cgtcgtcgtc ttcagtgtac gggctcaact cccatgtgcc tttctccgaa
      841 catgacagga cggaccgacc cgcctctctg tatgcagcga ccaagaaggc cggtgaggag
      901 atcgctcatg cctacaacca catctatggg ctctcgctca cggcgctccg tttcttcacc
      961 gtgtatgggc cgtgggggcg cccagacatg gcatacttct tcttcacccg ggacattctt
     1021 gctggtcggc caatcaccgt gtatgaaagt gcaggtggag gcacacacca gaccaccatt
     1081 tcccgagatt tcacctatat tgatgacatt gtgaaggggt gtgttggggc attggataca
     1141 gccgggcgta gcacaggcag tggaggcaag aagcgagggc cggcaccatt caggacatac
     1201 aatttgggga acacatctcc tgtgccggtg acacagctgg tggatttact ggagaagttg
     1261 ctcaaggtga aagcggtgag gaagattgtc aagatgccaa ggaatggtga tgtgccatat
     1321 acacatgcta acatcagtct tgctcagcgg gagcttgggt accgaccgtc aactgatctt
     1381 caaacagggg ttaagaagtt tgtgcggtgg tatctcgagt actacatgcc tgggtttgct
     1441 ggtaagcaga agcagcatgg cagtagcaac agcaagtctt cgcgaggtcg gagtggcaac
     1501 acaagcagtg caagatgatt ggatattcat tttcttcatg gccttcttct gacggtgtgt
     1561 atcattgttc tagatccagt gcttaactca tcaggtctga gaggctcgtt ttgctcagca
     1621 cgtccttcaa gtgaaacaaa acgatcatta attagcttgt attgaaaaaa cccttccact
     1681 ctattggctt ccccatagct gagcgttcaa atcctagttc cattagctgg ttcttaggat
     1741 gacaattgta ggaagaactg ggttgggttc tggggcaggc tgtgagttgc aaagactata
     1801 atagattctt ttagtgacat tttgtaccac gggagagaag gaagtacacc atgactgttt
     1861 cgtttgttca attgaaatag ctctgatcaa cctgctatct ctctgtactt tgcattgtca
     1921 tgttactttt gtagatgctc ggtctgtatt tactgc
//