LOCUS AK121154 1956 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023078O05, full insert sequence. ACCESSION AK121154 VERSION AK121154.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1956) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1956 /clone="J023078O05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 64..1518 /db_xref="Osa1:LOC_Os03g14540" /db_xref="RAP-DB:Os03g0249500" /note="(RAP Annotation release2) Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6)" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R03-TIGRv4S1-000521F (Chr.3: short arm=7868390, long arm=7870345, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAH00344.1" /translation="MAPQLTGAPGTAGAAGGAASVKPQFHHFHHHRLATRHHHPSPTS LLSKLAFWSVCSLSLLLAFLLLSPSAAPAPRAAPDSPRRSLHTSSPSAAATWGGAAWE KKVRASARVRRANGRGLTVLVTGAAGFVGCHAAAALRRRGDGVLGLDNFNDYYDPALK RGRAALLARSGVYVVDGDIADAELLAKLFDVVPFTHVLHLAAQAGVRHALVDPMSYVR ANVGGFVALLEAARMANPQPAIVWASSSSVYGLNSHVPFSEHDRTDRPASLYAATKKA GEEIAHAYNHIYGLSLTALRFFTVYGPWGRPDMAYFFFTRDILAGRPITVYESAGGGT HQTTISRDFTYIDDIVKGCVGALDTAGRSTGSGGKKRGPAPFRTYNLGNTSPVPVTQL VDLLEKLLKVKAVRKIVKMPRNGDVPYTHANISLAQRELGYRPSTDLQTGVKKFVRWY LEYYMPGFAGKQKQHGSSNSKSSRGRSGNTSSAR" BASE COUNT 367 a 606 c 557 g 426 t ORIGIN 1 gaaccccacc caaattcgcg agatccgacg aggagctcaa tccacattgc ggcagatcgg 61 gagatggcgc cgcagctgac cggcgcgccc ggcacggcgg gggcggcggg cggcgcggcg 121 tccgtcaagc cgcagttcca ccacttccac caccaccgcc tcgccacgcg ccaccaccac 181 ccctcgccga cctcgctcct ctccaagctc gccttctggt ccgtctgctc cctctcgctc 241 ctcctcgcct tcctcctcct ctccccctcc gccgcgccgg ccccgcgggc ggcgcccgac 301 tccccgcgcc gctccctcca cacgtcctcc ccgtccgccg ccgccacgtg gggcggcgcc 361 gcatgggaga agaaggtgcg ggcgtccgcg cgcgtcaggc gggccaacgg gcgggggctc 421 accgtcctcg tcacgggcgc cgcgggcttc gtcggctgcc acgcggccgc cgccctccgc 481 cgccgcggcg acggcgtgct tgggctggac aacttcaacg actactacga ccccgccctc 541 aagcggggcc gcgccgcgct cctcgcccgc tcgggggtct acgtcgtcga cggcgacatc 601 gccgatgcgg agctcctcgc caagctgttc gacgtcgtgc cgttcaccca cgtcctccac 661 ctcgccgctc aggcgggcgt tcggcacgcg ctcgttgacc cgatgtccta cgtgcgcgcc 721 aacgtcggcg ggttcgtggc gctgctcgag gcggcgcgca tggcgaatcc ccagccggcg 781 atcgtctggg cgtcgtcgtc ttcagtgtac gggctcaact cccatgtgcc tttctccgaa 841 catgacagga cggaccgacc cgcctctctg tatgcagcga ccaagaaggc cggtgaggag 901 atcgctcatg cctacaacca catctatggg ctctcgctca cggcgctccg tttcttcacc 961 gtgtatgggc cgtgggggcg cccagacatg gcatacttct tcttcacccg ggacattctt 1021 gctggtcggc caatcaccgt gtatgaaagt gcaggtggag gcacacacca gaccaccatt 1081 tcccgagatt tcacctatat tgatgacatt gtgaaggggt gtgttggggc attggataca 1141 gccgggcgta gcacaggcag tggaggcaag aagcgagggc cggcaccatt caggacatac 1201 aatttgggga acacatctcc tgtgccggtg acacagctgg tggatttact ggagaagttg 1261 ctcaaggtga aagcggtgag gaagattgtc aagatgccaa ggaatggtga tgtgccatat 1321 acacatgcta acatcagtct tgctcagcgg gagcttgggt accgaccgtc aactgatctt 1381 caaacagggg ttaagaagtt tgtgcggtgg tatctcgagt actacatgcc tgggtttgct 1441 ggtaagcaga agcagcatgg cagtagcaac agcaagtctt cgcgaggtcg gagtggcaac 1501 acaagcagtg caagatgatt ggatattcat tttcttcatg gccttcttct gacggtgtgt 1561 atcattgttc tagatccagt gcttaactca tcaggtctga gaggctcgtt ttgctcagca 1621 cgtccttcaa gtgaaacaaa acgatcatta attagcttgt attgaaaaaa cccttccact 1681 ctattggctt ccccatagct gagcgttcaa atcctagttc cattagctgg ttcttaggat 1741 gacaattgta ggaagaactg ggttgggttc tggggcaggc tgtgagttgc aaagactata 1801 atagattctt ttagtgacat tttgtaccac gggagagaag gaagtacacc atgactgttt 1861 cgtttgttca attgaaatag ctctgatcaa cctgctatct ctctgtactt tgcattgtca 1921 tgttactttt gtagatgctc ggtctgtatt tactgc //