LOCUS AK121102 4795 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023069N11, full insert
sequence.
ACCESSION AK121102
VERSION AK121102.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4795)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4795
/clone="J023069N11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4795
/db_xref="Osa1:LOC_Os11g45750"
/db_xref="RAP-DB:Os11g0684100"
/note="(RAP Annotation release2) Disease resistance
protein family protein"
/note="(Rice Genome Annotation Project) NBS-LRR disease
resistance protein, putative, expressed"
/note="mapping to R11-TIGRv4S1-000811R (Chr.11: short
arm=27176972, long arm=27188264, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1269 a 1086 c 1180 g 1260 t
ORIGIN
1 gactttaggt cccctaagat cgacaacctg gagcccgacg acgacgaggg gatggggagg
61 ggaagagcgg cggcgcgcac cgccgcgtcc caattcccac ggcaatggag gcacgctacc
121 tgcgagtacg agggggggag ctccatcttg ttcttctgcg cccgtccatt cttcttcctc
181 cgtccgtcca tctggtcgat cctcgatggg cggatggggc ggagggagcc ctcgtctgca
241 tcgcggccgg ccggccgccg gattcgggat acttgaggat tggtgtgtaa agcatatatc
301 ttgaaaggtg cttcagtgct tgtcaagtag tgattattga agtgtccaac agctacacca
361 cacagtggcc aatcgatcat ttattctgaa gaaaatattg ttgaatggct gaattgacca
421 gacgaccact gttggctgca aaccgaaagc taatcctcaa ggagaggaaa gcattggatt
481 tggaagctag gaatgaagca aaatggaaga actctctcct aagtccaacc gcttggagag
541 ctcgctcatg ctactctgat catctgatgc cttcagctta gaagatatca atggagggct
601 ccatgttcaa cctcccagga aggctcgacc ggctcctgcg tcgtcatggc agcatgctgc
661 ccaagggggc agaggaggag atacctctca tcaagcaaga tctcgaggaa ataatctccg
721 tcctccatgg tcactgtagc aagccaaagc tggaggacca tgccatggtg gtcaggtgct
781 ggatgaagga ggtacgtgag ctctcttatg acatcgagga ttgcatcgac cagtatgagc
841 atgccgccac tgccacccgg tcacatactg gacctaatat ttgtcgccgt aagttcaatc
901 agcggcatgg aaagatgatc ccttgggttc cctggaaact taagcagcgg ttgtggatgg
961 ccaacaagat cagagaattc agcctgcgca cccaggaggc gcctcaacgc cacaccatgt
1021 acaacaacct tggtggcatc accattgctt ctactactgg aggagatgta tgctctgcaa
1081 caccttggca tcccacgcag ttcagagagc acaccgacaa cgtctgttct gtcggtatag
1141 acgccgatgg tatggaagct gccctgaatg acctgaacaa gctcaaaaac ttgctcgcta
1201 gtatcccgac tgcttctctc gtgcagttca gggagcacgc caataaagtg cgtcatatcc
1261 accccgatgt ggaagccatc ctgaacaagc tcaaaaacat acccactggt atcaccacta
1321 cttctactac cactagaggt gatgtatctt ctacctcatc taggcaaccc acgcggttca
1381 tggagtccgc gggtcttgtt ggcatcaacg ccgcggtgaa caagcttgaa aacttgctcg
1441 atgtgtgcgg agaggagaag ctcaaggtgg tgtccatcgt gggagttgga ggagttggca
1501 agactacgct cgccaacaag ctgtactgca agcttcagcg gcagttcgag tgctgggcat
1561 ttgtgcagac atctcagaag actgatatga ggaggcttct catcaatatc ctctcacagg
1621 ttcagccgca ccagtcacct gacaattgga aggtgcatag cctaatttcc agtatcagga
1681 cacatctgca agataagagg tacttgatca taattgatgg tttatgggct acatccacat
1741 gggatgttat taagtgcgct ttgccggatg gtaatagttc cagcagaata ctaaccacaa
1801 cagaaattga ggatctagct ttgcaatctt gtagttatga cttgaaattt attttcaaga
1861 tgaaaccttt tggtgagggt gactcaagaa aactattttt cagtatagtc tttggctctc
1921 attctaagtg tcctccagaa gtcagtgaaa cattatatga tattgtaagg aaatgtggtg
1981 gtttgccgct agctattgtc actgttgcta gtcttttagc aagccagctt gagaaacaag
2041 aacaattgga ttatataaac aaatccttag gttacggttt gatggcaaat cctactttgg
2101 aagggatgaa acaactactg aacatttgtt acaacaatct tcctcagcat ttgaaggtat
2161 gcatgttgta tcttagtatg tatcaagaag atcacataat ttggaaagat gatttagtga
2221 gtcaatggat agctgaaggt tttatctgtg caactgaagg gcatgacaag gaagaaattt
2281 caagggccta ttttgatgag cttgtgggca gaaaaatcat ccagcctgta catatcgatg
2341 acagtggtga ggttttgtcc tgtgtagttc accatatggt actcaatttc gttacataca
2401 agtcaataga agaaaatttt attattgcaa tagaccattc acaggcaact ataagatttg
2461 ctgacaaggt tcgacgatta tctatccact ttagtaacgt agaagatgca actccgccta
2521 ccagtatgag attgtcccaa gttcggacag ttgccttctt cggggtcttg aagtatatgc
2581 ctttcgttat ggagtttcga cttattaaag ttctagttct acatattttg ggtgatgagg
2641 atagcatcgg catttttgat ctcactaaaa tttcagaact tgttcgactg agatatttga
2701 aggtcacctc taatgtcacc gtaaaactgc caacccagat gcaaggtcta ccatatttgg
2761 agacactgaa aatagatggg acaataagtg aagttccaac agacatttat ttgccacgtt
2821 tgctgcatct tactcttcct gctaagacaa acctgcccag tggaattgtc cacatgacat
2881 cgcttcgtac aattggatat tttgatctca gctgtaactc agcggagaat ctatggagcc
2941 ttggtgagct gagcaatctc cgggatttgc agctcaccta ttctgaaata cattctgaca
3001 atctgaagga taatatgaaa tatcttggat ccattctggg gaaactccgt aatctcacat
3061 ctataacttt atcgcctcct ggctcttcct gtccagatac tctacatatt gacaggacga
3121 ggatcaatgt tgatggctgg agcagtgtgt cctctccacc agcccttctt cagaggtttg
3181 agttgttacc atgtgtttgc atcttttcta acctcccaaa ttggattggg cagcttggaa
3241 acctctgcat tttgaagatt gggataaggg aagtaacaag taatagtatt gatgttctag
3301 gagtattacc gaaactcact gttttgtcac tttatgtcca cacaaagcct gcagaaagga
3361 ttgtctttga cagtgcaggg ttctcaatcc tcaaatactt cgagtttata tgcagtgtag
3421 catggatgaa atttgagatg ggtgcaatgc ctagtctaag gaagctcaag ctaggttttg
3481 atgtccatat agcagatcag catgatatta ttcctgttgg catcgaacat ctgtctggac
3541 ttgaagagat ctctgcaaaa attagggtcg cctgtactgc tcatgatcat tgtagaagat
3601 ttgcagagtc agctttgact aacgccttta tgatgcatcc aggacgtcct agcgtcaaca
3661 tacggtgtgt ggattggacc tttcatgata aggataatga ctgtgtgggg acacgagagg
3721 aagaatgtag gactccaatg aaacaggagc attttgtgaa agaagactta agtgagaaat
3781 ctgcagttct acaaaacgag cacgacgaag aagcacataa atttgttgac agaagatatt
3841 atcccatcat ggacgcggca gagatccgca ggtgtccgtg gagcgtcaac gaggagcagg
3901 agcagccggt gttgatctac gacgccagaa ccaagatctc ccagtcgtcg tccatgcaca
3961 gcgaattctg ggcggccgtc caacggctca ccggcccagc tgccacgccg gccaagacca
4021 agaggcacct ccacctgacg acctcgcctg agctggagga cggcttcttg ccggtacgta
4081 gtctcgtctt cccgtccgct ccggatccac ggtgcaacat gaagaagaag aagatgaggg
4141 ccggccctgg agggggtcga gcagtgcggt caaactgggc ccccaaatcg taggggcccc
4201 aacccaggga gcctgcaaag cctctcttct gcaacaaagc catgcgatga gatgatgcga
4261 acagaaacgc ccaattccta ctgcaaagcc tctcagtgcc ttgccgcctg ccgagttgcc
4321 gtcgaccgcc ccggcgccgc cgttggctgc tgctgcaagc ctgaagacag ctgcaactgc
4381 tgatttgcta aactgcgcac ctcagcctaa cgatcaaaac taaaagtctc aagaggtgtt
4441 gatgatgcga agtgatcagg tgagcagcag catgccagca acaccgtcgc catcgccaat
4501 tgagatttgt tttaattcta tgattttatc tgttggttgt tggtctattg ccatcatgcc
4561 atgtactgat gaacagacgt atatatacat gcactactat gttccatgtt aggttaatag
4621 gtttgtgact tactgacttt gtgtctgtct cttatttttt tagttgttta aaagatctga
4681 gttcagaggg attgagcttg gagacgtgct agtgtgtgat gagtcgtgcg catccggacg
4741 tctgtgaata tttaattggt aagactttaa atttgaattt gtagttttat ggtgt
//