LOCUS AK120996 2849 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023044G03, full insert
sequence.
ACCESSION AK120996
VERSION AK120996.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2849)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2849
/clone="J023044G03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2849
/db_xref="Osa1:LOC_Os08g40540"
/db_xref="Osa1:LOC_Os08g40550"
/db_xref="Osa1:LOC_Os08g40560"
/note="(Rice Genome Annotation Project) expressed protein"
/note="(Rice Genome Annotation Project) retrotransposon
protein, putative, unclassified"
/note="mapping to R08-TIGRv4S1-000786R (Chr.8: short
arm=25543916, long arm=25549492, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 767 a 637 c 704 g 741 t
ORIGIN
1 gttcgtcttc ctccgccttc cccgaatccc ccgctccccg acaccacacc gcgagatcct
61 cctcttccag atcaagcacc caccctacct agggtttcca ccccgccatg gccgaggtcg
121 cccgcgcctc ggcttcccca cctcccgcct ccgcctccac cggcggcgac cgcaagcgtg
181 gccgctcctc cccgtcgctc ccgccgccgc cgcccgggcc ccctccgcag gtcccgcatg
241 ggagcaagag gcaccgcagg acgagggggg cgggggcggg ttcgatcggc gccgcctcgg
301 gccgggagta gggtacgaca acccggacga taggaggtat ggaaatgatc atggtggtgc
361 aggaggaaga ggtggatatg gggatgagag aggtcagggt agaaacttca atcgtgcacc
421 agattggact gattctggac gtggtggatg gaatgatggc ccggctaact ctcgtaggga
481 aggcctcatg tcttacaagc agttcatgca ggagcttgaa gatgatgttt cgcctgatga
541 agctcaacac agatatgagg agtacaagtc agagtacata acaactcaga agaaagcgta
601 ctttgacctt cataagaacg acgactggct gaaaaacaag taccatccga ctaaccttga
661 aattgtcatg gaaaggttag ctgtttattt agtatttagt gaattttcaa gattatggtg
721 gactatcttc tcatattcat tgtgtctcca atgtccatat catctccact ttcttgtacg
781 tttatatgat aactacatta tcttttgttt gaagcagaag gaatgaactt gcacgaactg
841 ctgcaaatca attcctccaa gatttgcaga atgggagttt agacattggt ccaggattaa
901 caagttctgc aacaaacaaa tctgggaata gcgtagatga tacggatgct aatggaaaaa
961 aggggaaact tggaaagagc caagatgatt tatattatgc tgctcctaag gctcatccag
1021 ttagctctga gccccgtcga attagaattg acgttgagct agctcaagct ctcatttgta
1081 aacttgattc agagaagggt attgagaata atgttctgtc aggtagtgat catgacagag
1141 cagagaaaga taagtcacat ggttcaatgg gaccaatcgt aataatacgg ggttcatctg
1201 ctgtaaaggg tcttgagggt gctgagttgc tggacactct tgttacctat ttgtggcgta
1261 tccatggtgt ggattactat gggatgtctg agacaaatga gcccaaaggt ctaaggcatg
1321 tgaaagcaga ttcaaggacg tttaatgggg ctagctcaaa tgcagctgaa tgggagaaga
1381 aacttgattc cttctggcaa gataggattc aaggccagga tccaatggaa atattgaaag
1441 caaaggataa gattgatgca gctgctagtg aagtgctgga tccacatgtg agaaaaataa
1501 gggatgaaaa gtatggatgg aaatatggct gtggagctaa gggctgcaca aaacttttcc
1561 atgcccctga gtttgtccag aagcatctca aactcaaaca tgcggatttg gttagggaac
1621 tgacttcgaa agtgagagaa aatatttatt ttgataacta tatgaggtat gttttcttca
1681 ttgtcattct tttggctgaa ctaattttta acattccaaa gaagattatg ctgtacatgt
1741 tgcatgcagt gatcccaagg cacctggtgg gatgcctatc atgcagcaac ctgctccaag
1801 ggagaaagtc agacagcggc caccaataga gagtcggctg agagatgagc gtggcaatcg
1861 taggtttgat agaaatgatt caccaaccca tgatggatcc agtgacaacc ctgatgatgc
1921 atatgattct tatggtgatc cggttatgca tggcgccttt cctccggata ttcctgctcc
1981 tccagtgttg atgcctgtgc ctggtgctgg cccactagga ccatttattc ctgcaccacc
2041 tgaagttgct atgcgtatga tgagagatca gggtggacca ccaccttttg agccaactgg
2101 tggtccacgt cctaggagac cagggagggg tggtcttcca atgggtggcc catcaccaat
2161 tcttgctgct cctttaccac cccctcatat gcatgatcca cgcaaaatac gaagctatca
2221 agaccttgat gctcctgaag atgaagtgac tgttatggac taccgaagct tgtagaggaa
2281 ttggagacac gatccttttt tgtatctggg aaactgtagg taatattaca gaccgcaaca
2341 agacggcatt catttctaga tttttttgtg aacgcaaaca ggtaggactt tgaggttcgg
2401 agctctgtta ctgtctgtaa aatggatcac aggaaaacct gggacaagga gcatattctc
2461 attcaccaat caccactcac ctgaaaagaa aacattgtga agtttgttct ttgcaaaaag
2521 ttcctagcac tgtccattcc aaccaaatgt ctacaagcct gccatatcat caggtattcg
2581 taccgtattt gtatattcag ctactgggtg tgagtagatt ggaacctgat acatcggcgt
2641 atgcacagac tttctatgaa gcccgttatg aagaacattt gttccccatc tgctaagttt
2701 gagttcaacc ttgtcagctt gaagagtgtc ccagttcacc agtcagtatt gtatcagttc
2761 ttgccatttg atcaagctta gtgttgtccc attccttacc attgatgaag cttctgtcaa
2821 aatgggaata tatacacctc ggatgactg
//