LOCUS AK120969 1702 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023040M24, full insert sequence. ACCESSION AK120969 VERSION AK120969.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1702) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1702 /clone="J023040M24" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1702 /db_xref="Osa1:LOC_Os06g22820" /db_xref="RAP-DB:Os06g0334400" /note="(RAP Annotation release2) Similar to Cdk-activating kinase 1At (Cdk-activating kinase CAK1At)" /note="(Rice Genome Annotation Project) CAK1AT, putative, expressed" /note="mapping to R06-TIGRv4S1-000566R (Chr.6: short arm=13301562, long arm=13305575, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 418 a 492 c 434 g 358 t ORIGIN 1 gtgcagccac atcgtcaaaa tcgatcatca ccaaaaaaaa agaaaaatcc ctaaattacc 61 ctccccccaa atccccatgg cgatcggcgg cggcggcggc ggcggtagct ggagcatcca 121 cggccgcccc gacgtcacct cccgctacga ggtcctcggc cgcgccggct cgggagccta 181 cgccgacgtc taccgcggcc gccgccgctc cgacggcgcc cccgtcgccc tcaaggaggt 241 ccacgacgcc gtcagcgccc gccgcgaggc cgacgccctc ctcgccgccg cgccctcccg 301 ccacgtcgtc gccctcctcg accacttccc cggcggggac cacgacgacg acgtcctcgt 361 cctcgagtgg ctcccgctcg acctctccgc cgtcgtccgc gccgccgccg ccgccaggcc 421 gagcgccctc cccgccgcgc agcgcaagcg ctggatgctg caggtgctcg agggcgtcgc 481 cgcgtgccac agcgccgggg tcgtgcaccg cgacctcaag cccgccaacc tgctcatctc 541 cgaggacggg gtcctcaagg tcgccgacct tggccaggcc aggatacttc aggagacagg 601 aacataccaa ggtatgcatc catatgagca aagttcagga gtggagcctt gggtttcaca 661 acaacgagca gtgctacatg gagtgaaaga gaaccaccca tctcatgact cagaaactca 721 aactggtcag gagccagaga gactcaccgc agctgattac ctacatgaga tggaccaact 781 ccgggccaaa tccacacatg gagatgttga caaaatgagc ctacaggatg gggatgcctc 841 ctgtcttgcc acatgcagca cagcagacat tgacgatgat ccatttagag cctcctattc 901 atatgacgca gaagaaggca tgttggaaga agagtccggt gctttcactt cttgtgttgg 961 cacacgctgg tttagagctc cagagctcct ttatgggtca acaaactatg ggcaggaggt 1021 tgacctctgg tcactaggat gtattttggc tgaactgttt aatttagagc ctatattccc 1081 aggcacatct gatatcgatc agattggtag aattatcagt gttctgggca acatcacaga 1141 agaaaccttt ccaggctgtt caaatctgcc agattacaat aagattttct tcaacaaagt 1201 cgagaagcca ataggcctcg aagcatgcct gcctgataga tctgcttctg aagttggtat 1261 cataaagagg ctactttgct atgacccaac aaagagggcc agtgctgccg acttgctgaa 1321 tgatccatac ttcgccgaag aaccattacc tgtacctatt gaaggattac aagtcccaga 1381 atcaaaggat gaagatgatg acagcacaga agaatgggct aatttgaggg gtggagattc 1441 agattcagac ttcgatgaat tcggcagcat ggatgtcacc aagaccgaca agggtttcag 1501 catacgcttc tcgtgatcaa gaatgattga tgagggtaat tgtatcttcc tgaacatgct 1561 ggcagaggaa tttctgtcgc agcatattgt atggcatttt gataattgtt ttactatttg 1621 taaactgcga tatgttcatt atgttgtgta caacagcacc agctttcctg gtaatgagat 1681 gaataaacta cagtctgcac ct //