LOCUS AK120967 5900 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023040G12, full insert sequence. ACCESSION AK120967 VERSION AK120967.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 5900) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..5900 /clone="J023040G12" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..5900 /db_xref="Osa1:LOC_Os05g06670" /note="(Rice Genome Annotation Project) gibberellin 2-oxidase, putative, expressed" /note="mapping to R05-TIGRv4S1-000188F (Chr.5: short arm=3437594, long arm=3444008, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 1731 a 1201 c 1221 g 1747 t ORIGIN 1 gttttcgcag ccaactccaa catcctgagc tccaatctcc cactccattc cggccgcgca 61 ttctcccgct ctcgatcgat cgatcgatca tggtggtgcc ttccgcgacg acgccagcga 121 ggcaggagac ggtggtggcg gcggcgccgc cagctgcggc ggcgtccggt gtcgtcggcg 181 gcggcggcgg cgtgacgata gcgacggtgg acatgtcggc ggagcgcggc gcggtggcga 241 ggcaggtggc gacggcgtgc gcggcgcacg ggttcttccg gtgcgtcggg cacggcgtgc 301 cggcggcggc gcccgtcgcg gcgaggctgg acgccgcgac ggcggcgttc ttcgcgatgg 361 cgccggcgga gaagcagcgc gccgggccgg cgagcccgct cgggtacggc tgccggagca 421 tcgggttcaa cggcgacgtc ggcgagctgg agtacctgct cctccacgtc aaccccgccg 481 ccgtcgcgca ccgggccagg accatcgacg ccatggaccc ctctcgcttc aggtacgtac 541 aataccacca ctcactctta gcctagctta atcgattagt tttttactcc ctccatttct 601 ccgtttcccc gtttcatgtt ataagatgtt atgggttttt gaatatatag attcacgttt 661 cacgctataa aatgttctgg gttttgaata aattcatgca tgatctattg atgaactttt 721 aagagtccaa aacattttgt aacatggaac ggatggagtg gcgtattgtg ttgcgcctac 781 gtgtcaaagt atgcatgctt acatggcaca cgtatttaaa acattgttat gcatgtatat 841 aactaatgtt ctctatggtt taattttttc ttaatgctac ccatgcatat tctataataa 901 ataaagtgtg ccggactccg gtcacagaag aatatatttg ttttaatgta tcagtttaac 961 ttcgacgata attattattg ttcgaagtac aaattttcgg catatttaat agtgtggcct 1021 tgttctatca aaacataatt tttcgtaaga gattatatac ttgtataact tatttttgga 1081 ttgtagggat cctttcccta tggttttact tcaaaagatg acttacattt ggattggtga 1141 taaagaatat acaactaagt agacaaagtt atatctagtt cattttgaaa agttcaaggc 1201 tcttttttca acgggaaagg agtatcctat ataagatata ttatacagtt aactctgtgc 1261 cttttaaaag ctctgttgac agtaaaatct catgtagctg gttcatccaa aaaaaaaatt 1321 ctcatgtagc tgggcataca cgagcttttt tttttttaag aacttacata cacgagctta 1381 attacttctc tcgatccttt tgcggatgcg cttggttgct cgtaataaat tttgtcacaa 1441 atctttgata accccaccat ttcccaaatt taagcataca tggtggtaga actatattca 1501 ctaagtttta cagtgtcgtt gttacaacaa taaactaata ttgcaaatat tgcaatagtt 1561 acaatataat taatttcttc tatgtattat gtactgaaac gcatatcaat cacatgcatg 1621 gcactgcata tatggtctta aactatatat gaggcaacgt gaataatata tattattaat 1681 taagtattac ccgtatacac acacatacac atataattaa agattgtcat ttttattatt 1741 tttgctagac ccctcgtccc tgtgcatcac taaagtattt ttattgaact agctgacctc 1801 tacaggggtt taaagcttga ttacttaatt aaactgttaa tgaaagacga ctatatatga 1861 tccaataata tgttaattaa gacggtgcat gggtgtccgg tgtccctgca gtgtgagatg 1921 aacatgcaaa aaaaattaaa tatatatcat gctgtgttcc ttaactaacc ggccacatct 1981 acatattcat gtcataatcc tgcatctgtc tcactgctga tgtgatgccg tccaagcagt 2041 agtagtgtgg gttggtagca gtaaaagggt tttgtcagct tggttaggtt ttcctatcta 2101 caatatatct atctatcttt ttcatgtgtt gtcaaaatac agtgagatat gcttacatat 2161 ttctgcatct gagtactgct caggggtgat gcaacgaagc atcaggtaca tatctatata 2221 tttagagggc tcagggctcc atcgtttagc cttcagttta caggcataag aaaaaataaa 2281 ttttatagtt aatttttagg ttttttttat cgtaatttat tttttcagta tttactaaga 2341 acatgtgtat aaaagtttta tctatatatt attttttaat cactaatata ctgtttcgct 2401 tataactata tagtagtata aggtatagac ttgcatgatg tctatctaca tgcatgcatg 2461 ggatgcatat gtaggatagg cttggcttga gagatgtcta gctagctatg ggtttttcat 2521 cagctacagg gcaattaatt tatagatatg cataatatat tgtgttcaga agtcaaaaga 2581 aggccaagtt ggaatcatgc atacctgcac tgcactcatg ccagttgcaa gcttgcaatt 2641 gcaactgggc ttgcttcttt tcttttcagc tggtttggct tgcatatttt ccatgttatg 2701 atcttctgat gtagcctttt gactatatat caaggatgga ctaaatgtta gtttacacaa 2761 taaggaaaag gatggaaatg ttacactcat gtcatcatat actataactt aaggtaaatt 2821 aagatcaatt tacattaatt ttattaagaa aaagttgact caagaaagct gcagtttatg 2881 ttataatttt aacttattat gttagcatat ggggttttca tttttaattc ttcatagtac 2941 tacttcagta catatccata tgtatactgt cattttcaga cacaggtccc atcaattaaa 3001 tcacggaaat gcatgagtac atagttttca aaacaataat tatcacaata atggcataat 3061 tgatgctatg atggacaggc caatgataag ttagttccaa caatttaaga tcatacatag 3121 ctagtttcta aagcaaaaga aaagcatgca actgatggga cataacaaac ttgatagctc 3181 cacaaaatgg gcataagaaa ttttctgatg aaagttaggt atcattgtct aaccaaatag 3241 acattggaaa aggatcaagc ataccaattg atattttcat ttttgctcta aaaaatgact 3301 acataagtgg ttttgaaagc gaaagcgaat attgccattg gagaaaatgt ctaccaacta 3361 agacaataat atatcagatt ttccttaact atctttgtgt atgctgaatg agagctcaca 3421 tactaggaga gattactcac cactcactga ctgtactcag aaccaggtag tggcctaatc 3481 agagtttgct gagagaaaat atgatgaaat ggacaagaaa accctcactt aggtagttag 3541 aagactcctc tcagggtccc tctccaacaa actgtatata tttgtgtatc aaccaatctg 3601 acatatatgc agtggtttcc aattaatggc aatatccaac caccaactga tgcagcaaca 3661 gagtgagtac ttgaagcatc cttatctacc agaaagctct gcaagcttaa ttagcaaagt 3721 acagcaggtt ttcatgtaga aaatgatgtg tttagttggg atatacatga tatatacttt 3781 ttgaaactcc tcttagttct ctatcaccat acatacatca gccattaata tataatatcc 3841 atactagtac aagaatatta atcttaatgc cttaatcaac tcaaaagcct aagcttaatt 3901 atcacaagca catcattttg gaaacatatt gatagcaaca tgccagtgaa gtagtgaaca 3961 caaagaatgg gataataatg atcaagaatg catcaggtta agaacagaat ggctaggaaa 4021 tcttcacagt aaccattttg ctatatgaaa agtgcaagac aagaaggaag aacaacctct 4081 ttttgtcaaa tgcaacagac aggggcccac atggaagtac acacatgtct gatgagaata 4141 aaatgatcca ggcccctaaa gagcatatct atgctatcca tataaagcca aacaaaagaa 4201 aggaggcaca catgcaagga gtcctcttta tggtaagata aaatgaaatg tcccagaggt 4261 tgtgtagtgg caggggcagt gatacttgtg atccacgcac tgatgggtct ttccatggag 4321 cagtggaaaa aagtatggcc aatcctgtca acaacacatt tttgcccatt ggaaaatttg 4381 tcacccctcg gctgcatgat gtactgctga ttctgtggcc tatccatgca tcacaagatt 4441 cacaagaaac gaatatatca cgtcttgtag atggtggtgc acaagcacag aggcatacac 4501 atatacccat cagtgtatca tcttttctaa ctcatcaggc aggcatgccg agggagggtg 4561 ggtgcagctt ttgatttgct gcagccatca atcagtcaaa gaccttgctc ctctttctcc 4621 agcttctttt tacttgtcat ggcacatcca acctgattct gtgataacag cattcttttg 4681 ataaaatcaa tttcaagttg attgtgctca cttgctgata tcctccctca ctctgttgca 4741 gtgctattgt gaatgagtac attgaagcca tgaagaagct cgcatgtgag atcctggacc 4801 tgttaggaga ggggctaggt ctcaaggacc ccagatactt cagcaagctt accacaaacg 4861 ctgacagtga ctgcctcctg aggatcaacc actaccctcc atcatgcaac attcacaaac 4921 ttgaccatga tgaccaatgc aatatcaaga gccttgttag caccaaggct agcaatggtg 4981 ggaatctgat ggcaggtggg cgcattgggt tcggcgagca ctctgacccg cagatcctta 5041 gcttgctccg agcaaacgat gtggaagggc tacaggtgtt tgtgccggac cacgagggca 5101 aggagatgtg ggttcaggtg ccatcggacc catcggccat tttcgtcaat gttggtgatg 5161 tcctccaggc tctgacaaat gggaggctga taagtatccg gcacagggta attgcaaccg 5221 cctgcaggcc aaggctgtcc acaatatact tcgcatcacc acccctgcat gcacgaatct 5281 cggcactccc agagacaatc acagccagca gcccacgccg ataccgatca ttcacctggg 5341 ctgagtacaa gacgacaatg tactcactcc gcctgagcca cagccgccta gaactcttca 5401 aaattgacga tgatgacagc gacaatgcca gtgagggaaa agcataggaa ttgctggtta 5461 aattgcagac gatgcctatg gaccagtggg gattaggaag ctgaaactgt ccccaaaatt 5521 ttggctctct ggcagtctgg ctactatcgt cagatatctc actattatga tggtgtagtg 5581 cctaagttga cgggtgtgta atatcgttag cagtctacag aagctatggt tgtacggaag 5641 taatgtactg tcgccttttc agctaactat ccatgttctc tcttatatgt aatgagttag 5701 ttgacggatg tgtaatattg ctagcattgt atataagcta tggttgtatg gaagtatgta 5761 atatagcctt ttcagctaac tatccgtgtt ccctttgtcc ctctaaagca caaaagtaag 5821 acctaactac agagcacaat agatagtttt tgagaactat gatctattaa gaaatcttaa 5881 gagaaatcag aatacttttg //