LOCUS AK120923 2538 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023035G16, full insert
sequence.
ACCESSION AK120923
VERSION AK120923.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2538)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2538
/clone="J023035G16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 178..2151
/db_xref="Osa1:LOC_Os04g45860"
/db_xref="RAP-DB:Os04g0542200"
/note="(RAP Annotation release2) Similar to
Iron-phytosiderophore transporter protein yellow stripe 1"
/note="(Rice Genome Annotation Project) transposon
protein, putative, unclassified, expressed"
/note="mapping to R04-TIGRv4S1-000845R (Chr.4: short
arm=26935252, long arm=26939712, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00231.1"
/translation="MAGLDGGGDAEEGATHARGGGGAPPPWREQLTARGLVASLAVGA
MYSVIVMKLNLTTGLVPTLNVSAALIAFVVLRGWTQALARLGFAARPFTRQENTVVQT
CAVACYSIAVGGGFGSYLLGLNKRTYEMAGEDTEGNVPGSYKEPGIAWMTGFLLAVSF
VGLLALVPLRKVMIIDYKLTYPSGTATAVLINGFHTPHGDAMAKQQVNGFTKYFAMSF
FWSFFQWFYSGGDNCGFSQFPTFGLKAWQQTFFFDFSLTYVGAGMICSHLVNLSLLLG
AILSWGVMWPLISDLKGDWYSADIPESSMKSLQGYKAFICVALILGDGLYNFVKIVAL
TIKNLFDSSKLKNAKKGEDMPVLDELHRNEVFTTDNIPSWLAFSGYLGLTFIAVIAIP
MMFHEMKWYYVVIAYLLAPALGFCNAYGAGLTDINMAYNYGKIALFILAAWAGKDSGV
VAGLVGCGLVKSLVSISADLMHDFKTGHLTLTSPRSMIIAQAIGTVMGCVISPLTFFL
FYSAFDIGNPEGYWKAPYALVYRNMAILGVEGFSALPQHCLQLCYGFFGFAVAANLTR
DLCPPKYGRWVPLPMAMGVPFLVGASFAIDMCIGSLIVFTWHIIDKSKAALMVPAVAS
GLICGDGLWIFPASLLALAKISPPMCMAFRSTN"
BASE COUNT 581 a 594 c 666 g 697 t
ORIGIN
1 ggtgacgtgc tattcagttc tctttctcac cttcagtttc gtttggctcg ctgttcttgt
61 cttttcagtt ggagcaagag caagagagaa tccaggctaa ttcaggagag gcggaggaag
121 cggcagcccg ggccgccgcg cctcgagctg gtggtagcgc acccgcggga ggaggagatg
181 gccgggctcg acggcggcgg cgacgccgag gagggggcca cgcatgcccg cggcggcggc
241 ggcgcgccgc cgccgtggcg ggagcagctg acggcgcgcg ggctggtggc gagcctggcc
301 gtgggcgcca tgtacagcgt catcgtgatg aagctgaacc ttaccacggg cctcgtcccc
361 acgctcaacg tctcagccgc gctcatcgcc ttcgtcgtcc tccgcggctg gacgcaggcg
421 ctcgcccgcc tcggcttcgc cgcccgcccg ttcacgcggc aggagaacac cgtcgtccag
481 acctgcgccg tcgcctgcta cagcatcgca gttggaggtg ggtttggttc ttacttgctt
541 gggctcaaca agaggactta cgagatggcg ggcgaggaca cggagggcaa cgtgccgggg
601 agctacaagg agcccggcat tgcgtggatg actggattcc ttctcgccgt cagcttcgtc
661 ggacttctcg ctctcgtccc tcttaggaag gtcatgataa ttgactacaa attaacttac
721 ccaagtggga ctgcaacagc tgtgcttata aatggattcc acacacctca tggggatgca
781 atggcaaagc agcaagtaaa tggattcacc aaatattttg ctatgagttt cttttggagc
841 ttcttccagt ggttttactc tggtggagac aattgtgggt tctcgcagtt tccaactttt
901 ggactaaaag cttggcaaca aacattcttc ttcgatttca gtctcacata tgttggggca
961 gggatgattt gctcccacct tgttaatctg tctctcctac tcggcgccat tctctcatgg
1021 ggagtaatgt ggccactgat cagtgatttg aaaggggatt ggtattcagc agatatacct
1081 gaaagcagca tgaaaagcct gcaagggtac aaggccttca tctgtgtagc tctcatccta
1141 ggtgatggcc tatacaattt tgtgaagata gttgcactca ctattaagaa tctgtttgat
1201 agctcaaaac tgaagaatgc aaagaagggg gaagacatgc cagtgctcga tgaacttcat
1261 cgtaatgaag tttttacaac agacaatatt ccttcctggc tagccttctc tggttatctt
1321 ggattaactt ttattgcagt aattgccatt cccatgatgt tccatgagat gaagtggtat
1381 tatgttgtca tagcatactt attggcgcct gcccttggtt tctgcaatgc ctatggagca
1441 ggcctaactg acatcaatat ggcctacaat tatggaaaga ttgccctctt cattcttgca
1501 gcctgggctg ggaaagactc tggtgtagtt gctggcctag taggctgtgg tttggtgaaa
1561 tcgctggtgt ccatatctgc tgatctgatg catgatttca agacgggaca tctaacatta
1621 acatcaccga gatcgatgat tattgctcag gccattggaa ctgtcatggg ttgtgtaatt
1681 tcaccactaa ctttcttctt gttctacagt gcctttgaca ttggcaaccc agaagggtac
1741 tggaaagcac catatgctct agtctaccga aacatggcga ttcttggtgt tgagggcttc
1801 tctgctctgc cccagcattg cttgcagctc tgctatgggt tttttggctt tgcagtggca
1861 gctaacctta cgagggacct ttgcccaccg aagtatggta gatgggttcc cctaccgatg
1921 gcaatggggg ttcctttcct ggttggtgca agctttgcca tcgacatgtg tatcgggagc
1981 ctgatagtct tcacctggca tataattgac aaaagcaaag cagcactaat ggtgccagca
2041 gttgcatctg gtttgatatg cggggatggt ctttggatct tccctgcgtc cttgcttgct
2101 ttggccaaga tcagcccacc aatgtgcatg gcatttaggt ctacaaacta gaggagtagc
2161 agggattata attacatggc agttccatct actacaggaa agatgcagca atgcaataat
2221 gaagtattat atgggattcc tggaggtacc tgtgcagtaa atattggaaa ggtaccaaac
2281 attgttacca tttccatgtc aatgaagtaa gacaacagat tcaagataat tcatctcata
2341 acaatggcgt atttttattg cctcatctct taccaatgtg atttatggtt ttagcctgta
2401 ggcgctaata gaagaaattt tgtatagtag agaaatgttt agtgtataca tgtatatatt
2461 tggtgataag ttggacccga agaccgaata ttgtaacagg tctctttcaa gatcagctga
2521 tccaattctt actttgcc
//