LOCUS AK120632 2234 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013153H21, full insert
sequence.
ACCESSION AK120632
VERSION AK120632.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2234)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2234
/clone="J013153H21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 416..2011
/db_xref="Osa1:LOC_Os02g54860"
/db_xref="RAP-DB:Os02g0791200"
/note="(RAP Annotation release2) Zinc finger, RING-type
domain containing protein"
/note="(Rice Genome Annotation Project) XBAT32, putative,
expressed"
/note="mapping to R02-TIGRv4S1-001482F (Chr.2: short
arm=33589940, long arm=33593576, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH00102.1"
/translation="MRFGRPRGLGNFRVKSSIRGLPVHAKRGDPQLRASMGFLSLVGN
SFGCSASGERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHHEIV
SLLLESGVEINLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFA
ALHGHARCLRLVLADYVPSMPNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADGGLT
PLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQ
LLIARGASLSAQNASGWTPLMVARSWHRNSLEEILSKEPESRIRTVPSPYLCLPLMSI
MSIAREFGWRYLNQSPVCIDPCAVCLEGSCSVAAEGCKHEFCTRCALYLCSTSYTSVS
PAGAIPCPLCRHPIIAFTALPGTSPIRELPRNSLSLSFCTTCPAVNSDSTPSIASHLY
RTEFQCARMPPMGSSSFRSLSCQRLPAMKLNPSFCMGAMDTNPCLIRCSRFGPSFRRS
ASQGESSRRAWPLTFDPIAATGS"
BASE COUNT 461 a 553 c 593 g 627 t
ORIGIN
1 ggcaccccgc gattccccaa tccatccatc cagtcccccc cctcgctgga atcgtgggtg
61 tggggtgggt tctgaggatt cgaggcggca ggtcgcctcc gaggattccc ccttcgagtt
121 cgaggtccct tgttttcttg cgaggattgg gggcctgatt tagagggcgt tgtcggtcgg
181 tctcggtttt gcatttcttc cagctcggga ccgacgaccc tgggcgattc ccgaggagga
241 gtgagttcca ctctgatttc ttggtgtagc gcggaaagtt ggcttttttg ggtcgaattg
301 ttggtagtct cgctgcaatt ggaaaatttt gggctttctg aaccttgggg ttaaagatcg
361 tcggcatgcc taaagtcggg agcttgatcc tgtctggtga tcattcttga atcgaatgcg
421 gtttgggcgg cctcgtggat tgggaaattt cagggtgaag tcttcgattc gaggccttcc
481 cgtgcacgct aagagaggag atcctcagct tcgagcatcc atggggttcc tcagccttgt
541 gggcaactca tttgggtgct cggcttccgg cgagcggctc gtctcggcgg cccgcgacgg
601 cgacctgcag gaggcgcgcg cgctgctcga gtacaacccg cggctcgccc ggtactccac
661 tttcggcggc cgcaactcgc cgctgcacta cgccgccgcg cagggtcacc atgagattgt
721 ttctctgttg ctcgaatccg gcgtcgagat caacctcagg aattacaggg gccagactgc
781 tttaatgcaa gcctgtcaat atggccactg ggaggttgtt cagacactga tgcttttcaa
841 tgcaaatgtt cataggacag attatttgaa tggcggtagt gctctccatt ttgctgcact
901 acatggtcat gcccggtgcc ttcgtcttgt gcttgcggat tatgttccca gcatgccaaa
961 cttctggaac tcgatgaagg acagcctatc tgaagaaggt ccatctgctg atcttgatga
1021 agatggtttg ttcaagatgg taaatcagaa ggcggatgga ggactgactc cgcttcatat
1081 ggcagcgtta aatgggcatg tagagtgtgt gcaattgtta ctggacttgg gagcatctgt
1141 tattgaggcc actattgaag atggaacaac tattgactta ataggagctg gtagcacccc
1201 gcttcattat gctgcatgtg gtgggaatgc tgtctgttgt caacttctta ttgctcgagg
1261 agctagcctt tctgcacaga atgctagcgg ctggaccccg ttgatggtag ctcgctcatg
1321 gcataggaac tctcttgagg aaattcttag caaagaacca gagagtcgaa tacgcactgt
1381 tccttctcca tatttgtgcc tcccgcttat gagtatcatg agcattgcca gggaatttgg
1441 ctggaggtac ctaaaccaat cacctgtatg tattgaccca tgtgctgtct gcttagaagg
1501 aagctgctct gttgctgcag aaggatgcaa acatgaattc tgcacgagat gtgctttata
1561 cctttgctca accagttaca catcagtgag cccagcaggt gccataccat gccctctctg
1621 tcgacaccca atcatcgctt tcactgcgct tcctgggaca agcccaataa gagagctccc
1681 aagaaacagt ctttcattgt cattttgcac cacatgccca gctgtgaact ccgattctac
1741 tccctcaatc gccagccatc tgtaccggac tgaattccag tgtgcacgca tgccacctat
1801 gggttcatcc tccttccgtt ccttgagctg ccagaggttg ccggcgatga agcttaaccc
1861 gtcgttttgt atgggtgcta tggatacaaa tccctgccta ataagatgct caaggttcgg
1921 acctagcttt cgtcggtcgg cttcccaagg agaaagtagc aggagagcat ggcctctaac
1981 ctttgatcca attgctgcca ctggtagctg atacctgata tttcctcagt tttgtgccca
2041 ttttgaggtt taccatgtat attcattggt tgcattggtc tggtttttgc cgatgtgaga
2101 tgaacttgct ggtcccaatt ccttgttgat atcagtagca gcatgtaact actcctttct
2161 cttgtctgta aataaccttt gtattgctgt gtattgtccg gaaatgaaga aatgaaatgc
2221 ggatgagttg aact
//