LOCUS AK120608 1663 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013151F13, full insert sequence. ACCESSION AK120608 VERSION AK120608.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1663) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1663 /clone="J013151F13" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1663 /db_xref="Osa1:LOC_Os07g07270" /db_xref="RAP-DB:Os07g0167200" /note="(RAP Annotation release2) Similar to Zinc finger POZ domain protein (Fragment)" /note="(Rice Genome Annotation Project) speckle-type POZ protein, putative, expressed" /note="mapping to R07-TIGRv4S1-000148R (Chr.7: short arm=3609151, long arm=3612703, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 382 a 438 c 430 g 413 t ORIGIN 1 gacccgaagc atcgaacccg aaacgctcac cccaaaattc cccattcccc aagccctaac 61 cctagctttg atccgaccac cgcttcccct cccctcccat ggacgacgac gccggcgacg 121 cctcgccgcc gccggccgcc gcgggggttg gcgccaccgc cgcccagtcg cgggacatgg 181 cggcgtcgcc gaccagctcc cgctccgtga cggagacggt gaacggctcc caccgcttcg 241 tgatccaggg ctactcgctc gccaagggga tgggcgtcgg gaagcacatc gccagcgaga 301 ccttctccgt cggcggctac cagtgggcgg tctacttcta ccccgacggg aagaaccccg 361 aggacaactc cgcctacgtc tccgtcttca tcgccctcgc ctccgagggc accgacgtcc 421 gcgccctctt cgagctcacg ctgctcgacc agagcggcaa gggcaagcac aaggtccact 481 cccacttcga ccgctccatc gagtccggcc catacaccct caagtaccgc ggctccatgt 541 ggggttacaa aaggttcttt cggcgaaccg ctcttgagac gtcggacttt ttgaaagatg 601 attgcttgaa gataaattgc actgtgggtg ttgtggtgtc gactattgat tactccagac 661 cacactctat cctggttcca gactctgata taggctatca ttttggtacg cttttggaca 721 atcatgaagg ggtcgatgtt gttcttagtg tgggaggaga gagatttcat gcacataagt 781 tggtgttggc tgcacgatct actgtattta gatcaaaatt tttcgatgat gaggatgggg 841 agaagaatga gcctggtgag aatgatgatg tacaagagat tgttattgat gatatggaac 901 caaaggtttt caaggcaatg cttcatttta tctacagaga tacacttgtt gatgataacg 961 agttgggtgg gtcaagctct gagggctcta tcttcgatac attggcagcg aagttgttgg 1021 ctgcagcaga caagtatgac ttagcaaggc taagattgct atgtgaatct tacttgtgca 1081 aagccatttc tgtggctaca gttgcaagta ctctagcatt ggctgatcga caccatgcta 1141 tggagcttaa agctgtttgc ctaaagtttg ctgcagaaaa cctttcagct gtaatccgga 1201 ccgaaggatt cgattacctc aaggacaact gcccatcact tcaatccgag atactgagaa 1261 ctctcgccgg ctgcgaagag gagtgcagca gcggcggcaa gagccagagc gtgtggggtc 1321 agctctcgga tggtggtgac acgagtggcc gtagggttag gccaagaacc taaaagaccc 1381 accacataac actgaccttg tttagcgagc acctgtgtaa atggcgacat caatatcatc 1441 tgtatgtgac aaagatgaga tctgatagtt gacttggact tcatctcatc acgctctttt 1501 tgcatcgtaa ttgctatgct gtttataagt ttagctgatt gtatttgatc ctgtgacccg 1561 ttgctgctgt gcggacgctt ccataaactc actacaaaat ggtgattttt tgggacttgt 1621 tcgaatcagc tttcttctgc tagtaacaga tttgttttag ctc //