LOCUS AK120576 2233 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013135C24, full insert
sequence.
ACCESSION AK120576
VERSION AK120576.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2233)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2233
/clone="J013135C24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2233
/db_xref="Osa1:LOC_Os09g32020"
/note="(Rice Genome Annotation Project) ubiquitin fusion
degradation protein, putative, expressed"
/note="mapping to R09-TIGRv4S1-000592R (Chr.9: short
arm=19116560, long arm=19118792, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 396 a 771 c 666 g 400 t
ORIGIN
1 ggatgttcag agtgttctct gaattcttat atctgaattt ctgaagactc aactgccacg
61 ggagggatgg cgcagccgga gaccttgtcg ctggccgggc ggcgggtggc gttcacgacg
121 ccgcagaccg acgccggcgg cggcggctac ggcggccggc tccacgccat cctgcggcag
181 cgcggcgcgc ggccggtccc ggtgcccacc atcgccatcc gcgcgcacga cccggacatc
241 ctccgcccct tcgtcgcgcc gggcggcctc gacgccttcg cggcgctcgc cttcacctcg
301 cgctccggca tctccgcctt ctcccgcgcc ctcctcccgt cctcctcctc ccccgcgcgg
361 cggccgcggc accccgtctc cgacgccgcc accgcgctac ccttcaccgt cgccgccctc
421 ggcagcgacg ccgacctcct cgacgcggcg ttcctctcca ggctctgcgg cgacgcgggc
481 gggagggtgt cggtcctcgt ccccgacgtc cccaccccgg ccggcctcgt ggaggcgctg
541 gggagcgggt ccggcaggcg cgtgctctgc cccgtgcccg acgtcgtcgg cctacgcgag
601 ccgccggtcg tgccgggctt cctcgccggg ctggaggcgg ccgggtgggt cgccgtgcgc
661 gcgccggcgt acgtcacgtg ctgggcgggg ccgcgctgcg cggaggctct ggtggacgcc
721 acggcgcccg acgccgtcgt gttcacctcc accgccgagg tggagggcct gctcaagggg
781 ctggacgccg cggggtggag ctggccgcgg ctgcgcgcgc gctggccccg catggtcgtc
841 gccgcgcatg gccccgtcac cgccgacggc gtcaggaggc tgggcatcga ggtcgacgtc
901 gtcggcgcca ggttcagcag cttccatggt gttctcgacg ccctcgccgc gaaactcgaa
961 tcagattgaa gcactaccat tgttcgtccc aaatccgaat caattttaga tttctaaacc
1021 gaatcttgtt gcgagttctt ctcctaccca tccgcgtctc ggggcttgga atcgaatcct
1081 cgccaagttc ggatcaacga actgccctca taagcccgcg tcccctcctt cctcgcgtcg
1141 acgccgcacc gcaccgcatc tccgctcgcc gccgccgacg acgacgagat gctttcccgg
1201 attctgcatg gctatggagg acacggcggg agaggcttcg agcagacgta ccggtgctac
1261 tcggcggcgg ccttcaacaa gccgcagctc gaaggcggag acaaggtgat catgccggcg
1321 tcggcgctcc accgcctcgc ctccctccac atcgactacc cgatgctgtt cgagctctcc
1381 caccacggcg acgccgccgc ccaccgggtc acccactgcg gcgtgctgga gttcgtcgcc
1441 gacgagggca cggtgatcat gccgcggtgg atgatgcgcg gcatgcgcct cgacgacggc
1501 ggcctcgtcg tcgtcaggag cgccagcctc cccaagggca gctacgccaa gctgcagcct
1561 cacaccggcg acttcctcga cacggcgaac cccaaggccg tcctggagaa gacgctgcgc
1621 agcttcacct gcctcaccac cggcgacacc atcatggtgg cctacaacaa caaggagttc
1681 ctcatcgaca tcgtcgagac gaagcccgcc tcggccgtct gcatcatcga gacggattgc
1741 gaggtcgatt tcgcacctcc actcgattac aaagaacctg aaaaggttca gcagaaacca
1801 tctgttcctt caagcaaggc ggcttccgaa gatcaagatc aaatcaaaga tgagccagaa
1861 ttcagagcat tcactggttc agggaatcgt ttggatggta aggcctcaaa accgctagca
1921 gcagggatct cttctaatcc tgctgctgca agttctgcaa tttcagactc gaacaagaag
1981 gtgaatcagg agacagcagc atcaggagtt agcaactcta cacgtcagaa aaaggggaag
2041 cttgtttttg gttcaaacaa aagcagcagc agcagcaaag aaccagagaa ggctcctcct
2101 gttaaagttg atgaacttgc aaagaaggaa gagcccaagt tccaagcatt ttctgggacg
2161 agctactcgt tgaaacgtta gctgctgcta ttagggttaa aagttttgga atcaatcatt
2221 tgtttcttac ttg
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