LOCUS AK120575 1323 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013134L17, full insert
sequence.
ACCESSION AK120575
VERSION AK120575.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1323)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1323
/clone="J013134L17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 502..1086
/db_xref="Osa1:LOC_Os08g17294"
/db_xref="RAP-DB:Os08g0274700"
/note="(RAP Annotation release2) GINS complex, Psf3
component family protein"
/note="(Rice Genome Annotation Project) TTN10, putative,
expressed"
/note="mapping to R08-TIGRv4S1-000383F (Chr.8: short
arm=10560987, long arm=10571664, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH00078.1"
/translation="MPGYYDIDDILMEEEPISVVFQVSANGVGLLDPGAERNSVEKGA
KVDLPFWLAHGLLSLEQAVSINVPPCFTQKTRKEIQADAACVDLRIRCPYFYELGCKI
VPLVNDRSIGLFLRYAFTSRYKEILSKSHSSSMMTVPKFVPRLTKEEAQVFESARDSM
TAFKKWRAGGVRLQKASILGRKRKTKLPDGPSAP"
BASE COUNT 286 a 395 c 350 g 292 t
ORIGIN
1 accagcttcc catcccagcc gccacgccca cgcgtcgcaa gccgccgcca gtcgacgcac
61 gcgccgactg cgccgtcgcc gcgccagccc ggccgcctgc ccgcgcacct caccgtcgcc
121 agtcgcgctg cccagcccgc tagccgcctg cgcgcgccgg cgcgcgcctc gccgtcgccg
181 gacgcccaga cgcccggtcg gcggtcgcgg ccgcggcgtt gcctcgccgg ccgcccacag
241 gccacagccg gctcgccggc tgctcggctc gccgctcgcc gcctccgcac ctcgccgcct
301 ccgcggctcc gcacctcgcg cctggccggc gcggtagcgc cccgcgcccg gcggccgcct
361 gcgcgcctcg cggccttcgg cctcccatcc tcgagcaaca tcacagcaac cgagcattcg
421 agcaactgca acgtgtagct gcttatgcca aagggtgaca gaaatcaaga ataagcaata
481 gtattctgtt tgcttggtgc aatgcctggt tattacgaca tcgatgatat cctgatggag
541 gaggagccta tttcggtagt ttttcaagtg agtgcaaatg gtgttggact actagatcct
601 ggcgctgaaa gaaacagtgt tgaaaagggt gctaaggtgg accttccatt ttggcttgca
661 catgggctgc tgtctctgga acaagcagtt tcaataaatg tacctccttg cttcacccag
721 aaaacccgga aggagatcca agctgatgca gcctgtgttg atttgaggat tcgttgccct
781 tacttctatg agctaggatg caagatagtc cctttggtga acgacaggag cattggactg
841 ttcttgcgct atgcattcac tagtaggtac aaggagatac taagcaagtc acacagctct
901 tccatgatga cagtgcccaa gtttgttccg cgccttacaa aagaagaagc tcaagtgttc
961 gaatctgcta gggactcgat gaccgctttc aagaagtggc gcgctggcgg tgtgaggctg
1021 cagaaagcgt ccattcttgg taggaaaagg aagacaaaac tgcctgatgg accttctgca
1081 ccttgaacca tgttttaggt tcttctgtat ggaaaatcgt acttgagctg atgtatgtat
1141 acttcattaa tatgtcgctg taagagaaga ccaaaagtga aacaattccg ttcggagatc
1201 acacgtttgt gcattctaat ctggtggctg gccaaccaac acagcctctt gaacaaaggg
1261 cagttagtta ttatattcct tccttttgga atcaccgaaa cgcgtaatac atattttaac
1321 tgc
//