LOCUS AK120314 1941 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013055L13, full insert
sequence.
ACCESSION AK120314
VERSION AK120314.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1941)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1941
/clone="J013055L13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1941
/db_xref="Osa1:LOC_Os02g49880"
/note="(Rice Genome Annotation Project) zinc finger
protein CONSTANS-LIKE 16, putative, expressed"
/note="mapping to R02-TIGRv4S1-001321R (Chr.2: short
arm=30467868, long arm=30469904, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 375 a 544 c 641 g 381 t
ORIGIN
1 gagaggtttt ttgtggaatc atcttttgtg ctgggagatt tcttctgttt gttcttttgt
61 ttcgtcgtga cgcatgagct gcagctcgga gaaggcggcc ggggccgtgg gcggcaaggc
121 ggcgcgcgcg tgcgacagct gcctgcggcg gcgggcgcgg tggtactgcg cggcggatga
181 cgccttcctg tgccaggggt gcgacacgtc ggtgcactcg gccaacccgc tcgccaggcg
241 gcacgagcgc ctgcgcctgc gcgtctcgtc gcccccgccg ctgacggcgc gggcgtcggt
301 ggaggaggag gcggcggcgg cggtggggac gacgacgacg acgacgtcga agagagaggg
361 cggcgtcacg ccggcatggt cgaagcgcaa ggcgcgcacc cggcgcccgc aggtcaagag
421 cgtcgggcag ctgctctcga ggcggctcgt cgtgccggag atggcggtgg agtcgtcgga
481 cgaacggaag gccgacgaag acggagctca cgaggagctc gaggggcagt tgctgtaccg
541 cgttccggtc tttgacccct ccctcgccga gttctgctcg cgcccccgat cgatgacgcg
601 gcggccgcat cctcatcgtg cttcaaggag gacgccgccg acggcgccgt ggaagacgca
661 aagtatccgg cagctgcggc gtcgtcgccc gtgcagcagc tcccggatag ctttgtcaac
721 ttcgaaccga cggacgccga gctgagggag ttcgccgccg acatggaagc cctactcgga
781 caaggcctgg acgacagcaa cgagctgcag gactcgttct acatggagac cctagggcta
841 ataacgccgc cggtagaaga atccggccgg gtgaagatgg agctcgacgg cggtgttgcc
901 tccaacagca gggtatctct cccatcatgc cgcgctcatc cgaagccgga ggacgtcgaa
961 tccgccgacg tgctggacat cgatttcaac tgcacctcgc cggacgaaca gaagtcgtcg
1021 gcgagcaacg gcgccgcagc cgattcgcag ttcttccaca ggagcctgga tctcaggctc
1081 aactacgagg cgatcatcga gagctggggc aactcgccgt ggaccgacgg ccggccgccg
1141 cacggccagc tcgacgactt ctggcccaac gaccaccatt actcggggtt gtgggctgcg
1201 ggagggggcg ggcatggcgc ggaggtgggg atgatgacgg tgaggccgcg gatggacggc
1261 ccggggcggg aggcgcgggt gacgaggtac agggagaagc ggcgtacgcg gctgttctcc
1321 aagaagatac ggtacgaggt gcggaagctg aacgccgaga aacggccgcg gatgaagggc
1381 cggttcgtca agcgcccctc cgccgccgcc gccccgtgcg ccgtcaccta gacgtacgat
1441 cgcgcacggc ccggcgcgcg gcaccatgcg tacgtgtccg gtgtcgagac ttgcctgcgt
1501 tcgatcgtat gcctcatgga ctcgattggc acaaaagttc acgcaaaatt tgtcgaagct
1561 gcacgattca agtagtataa cgttgttcaa ttcaaaagtt tttctcttcc tttttttttt
1621 cggttttgtt ggtgtttggc tcggtgcttt tggatctctt ttatctctgt tccatcgacc
1681 ggagagaaag taggcgattg tacttgtgta aacattggtg ttcatggttt tgtagaaaca
1741 ctccataaag gaaacaaaat gacttgtata tgtaaactgg gttgtgcctg cgccacaccc
1801 atgtacattg agtaatcagt acatacttaa ttattttctt gcatgtagat aactggacaa
1861 gtatctgaaa acttaccggg acgatcaaaa gtgttcatga taatcacatt cataaaatca
1921 ctgctgtaag cattgtccgc t
//