LOCUS AK120185 1976 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013034F13, full insert
sequence.
ACCESSION AK120185
VERSION AK120185.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1976)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1976
/clone="J013034F13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 115..1644
/db_xref="Osa1:LOC_Os09g26880"
/note="(Rice Genome Annotation Project) aldehyde
dehydrogenase family 7 member A1, putative, expressed"
/note="mapping to R09-TIGRv4S1-000441R (Chr.9: short
arm=16329102, long arm=16337463, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG99908.1"
/translation="MGSFARKEHQFLAELGLAPRNPGSFACGAWGGSGPVVTSTNPTN
NQVIAEVVEASAREYEEGMRACYDAAKTWMAIPAPKRGEIVRQIGDALRAKLHHLGRL
VSLEMGKILPEGIGEVQEIIDMCDYAVGLSRQLNGSIIPSERPNHMMMEVWNPLGVVG
VITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIAMTKIVASVLERNNLPGSI
FTAFCGGADIGQAISLDTRIPLVSFTGSTKVGLMVQQQVNARFGKCLLELSGNNAIIV
MDDADIQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYRTFLDQLVEVYKQVRIGDPL
ENGTLLGPLHTPASRDAFLKGIQTIRSQGGKILYGGSAIESEGNFVQPTIVEISPSAP
VVREELFGPVLYVMKVQNLKEAVEINNSVPQGLSSSIFTKRPDIIFKWIGPHGSDCGI
VNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRATCTINYGSELPLAQGINF
G"
BASE COUNT 512 a 430 c 520 g 514 t
ORIGIN
1 gacagccacc gcctccccca ccccaccccg atcccctccc cgccgtacgg gcgcagaagg
61 aacccgtctt ctagaaggag gaggagggct acctctctct ctctctcttc tgccatgggg
121 agcttcgcga ggaaggagca ccagttcctc gccgagcttg gcctcgcgcc gcggaacccc
181 gggtccttcg cctgcggcgc ctggggcggc tcgggccccg tcgtcacgtc caccaacccg
241 acgaacaacc aggtcatcgc ggaggtcgtg gaggcgtccg cgcgtgagta cgaggagggc
301 atgcgcgcct gctacgatgc cgccaagacc tggatggcga ttccagctcc aaagcgagga
361 gaaattgtta ggcaaattgg tgatgcattg agagcaaagc tccatcacct gggcaggctt
421 gtgtcacttg agatggggaa aattcttcct gaagggattg gagaggttca ggaaatcatt
481 gacatgtgtg attatgctgt gggcctaagt cgccagctaa atgggtccat cataccatct
541 gaacgcccga atcatatgat gatggaggtg tggaatcctc ttggagttgt tggtgttatc
601 acagcattca attttccttg tgctgtgctg ggttggaatg cctgcatagc tttggtatgt
661 ggaaactgtg ttgtctggaa aggtgctcca actactccgt tgatcactat tgcaatgact
721 aaaatagttg ccagtgtatt ggagaggaac aacttgccag gctcaatttt tacagcattc
781 tgtggtggtg ctgacattgg ccaagcaatt tctcttgaca caaggatacc cttggtttca
841 ttcacaggaa gcacaaaggt tggtctaatg gttcagcagc aagtgaatgc aagatttggc
901 aaatgccttc ttgaacttag tgggaacaat gccattattg taatggatga tgcagacatt
961 cagctagctg tccgttcagt gttgtttgct gctgttggaa cagcaggaca acgctgcact
1021 acatgtcgta ggctgcttct tcacgaaagc atataccgaa catttcttga tcaacttgtt
1081 gaggtttata aacaagtccg aattggggat cctttggaga atggtacgtt actggggcca
1141 ttgcacactc ctgcttcaag agacgccttc ttgaaaggca tccaaaccat cagatctcag
1201 gggggaaaaa ttctttatgg aggatctgca attgaatctg agggaaactt tgttcagcca
1261 acaattgtgg aaatttcacc ctctgcaccg gttgtgagag aagaactctt tggtcctgtt
1321 ctttatgtga tgaaagttca gaatctgaag gaagcagttg aaatcaacaa ttctgttcct
1381 caaggattga gcagttctat atttacaaag agaccagata ttattttcaa gtggattggg
1441 cctcatggta gtgactgtgg cattgttaat gtaaatattc ccacaaatgg tgctgaaatt
1501 ggtggagctt ttggtggaga aaaagctact ggtggtggac gagaagcagg gagtgattcg
1561 tggaagcagt acatgaggag ggccacttgt acgatcaact atggaagcga gctgcctcta
1621 gcacaaggaa taaattttgg ctagttcggt ggtcaagatc ggctgatgaa catgttaagc
1681 ttcatcgaca gacttcagga atttctactg gcgtcaactg aaaaccgaaa cttcaacgca
1741 gcagcattgc tatgtgtgca tataataaga gatgagtcca atattaatgc atgtactgct
1801 cttgctatga ttagccgtcg gagttcgagt ccaataaaca gggaaaaatt gcgtattccc
1861 tgatcggttg atatgtacca acatttctga tgtaatcttt agaacggtat cggttgaaaa
1921 cttgaaatga acgaaaacgc ggtaagaata caaaatggtg tgcaaacctt caggct
//