LOCUS AK120180 1741 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013033M18, full insert
sequence.
ACCESSION AK120180
VERSION AK120180.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1741)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1741
/clone="J013033M18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 118..1452
/db_xref="Osa1:LOC_Os03g56810"
/note="(Rice Genome Annotation Project) tubulin beta-7
chain, putative, expressed"
/note="mapping to R03-TIGRv4S1-001563F (Chr.3: short
arm=32310692, long arm=32313636, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG99904.1"
/translation="MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDSDLQL
ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWA
KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP
DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLA
TPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR
GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQ
NKNSSYFVEWIPNNVKSSVCDIPPRGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRK
AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEYEDEEEEAEAE"
BASE COUNT 357 a 479 c 495 g 410 t
ORIGIN
1 gacccaagca agcaaccccg tctcctccgc ttcgctactc tcctcgtcgt ctccggctcc
61 ggctccggtt tccggcgagc ggcggcgcga tcccgggcgg cgaaggaggg ggaagccatg
121 agggagatcc tccacatcca gggcgggcag tgcgggaacc agatcggggc caagttctgg
181 gaggtgatct gcgacgagca tggcgtggac gcgacggggc ggtacgcggg ggactccgac
241 ctgcagctgg agcggatcaa cgtctactac aacgaggcga gcggcgggag gtacgtgccc
301 cgcgccgtgc tcatggacct cgagcccggg accatggact ccgtgcgctc cggccccttc
361 ggccagatct tccgccccga caacttcgtc ttcgggcagt ccggcgccgg aaacaactgg
421 gccaaggggc actacaccga gggcgccgag ctcatcgact ccgtcctcga cgtcgtccgc
481 aaggaggccg agaactgcga ctgcttacaa ggattccaag tttgccattc attgggagga
541 ggcactggat ctggcatggg aacccttctt atttctaaga ttagggagga gtacccggat
601 agaatgatgt tgacattttc cgtcttccca tcaccaaagg tctcggatac tgttgtggag
661 ccttacaatg ctaccctttc tgttcaccaa cttgttgaga atgctgatga atgtatggtg
721 cttgacaatg aagctctcta cgacatatgc ttccgcacac taaagcttgc tacccctacc
781 tttggtgacc tcaatcatct tatctctgca accatgagtg gtgttacatg ctgcttgagg
841 ttccctggtc agctcaactc tgatctgcgc aaacttgctg tgaatctcat ccctttcccc
901 cgtctccact tcttcatggt tggctttgcg ccattgactt cacgcggatc acagcagtac
961 cgtgctctca ccgttcctga gctgacacag caaatgtggg atgcgaagaa catgatgtgc
1021 gctgctgatc cccgccatgg ccgctacctc acagcttctg ccatgttccg tgggaagatg
1081 agcaccaagg aggtggacga gcagatgctc aatgttcaga acaagaactc ctcatacttt
1141 gtcgagtgga ttcccaacaa cgtcaaatcc agtgtctgtg acattccgcc cagggggctg
1201 aagatggcgg cgaccttcgt cgggaactcc acctccatcc aagagatgtt ccgccgggtc
1261 agcgagcagt tcactgccat gttcaggagg aaggctttct tgcactggta cacaggcgag
1321 ggaatggacg agatggagtt caccgaggca gagagcaaca tgaacgatct cgtcgcggag
1381 taccagcagt accaggacgc cacagccgat gaagagtacg aagacgaaga ggaagaagct
1441 gaggccgaat agcattgagc cccatttgcc cttcacaggt tgttttgcca gtgaagagtt
1501 ttgtgtcttt gtgatgctgt gctctttttt ctttctctga cgtgcgtgat ggatgtatgg
1561 gtgaggtttg cgtccgtgct tcgttttgtc acctgtgctg cgtagcaggc tgcagtcccg
1621 ttttgtaaga cgtctctggt ggtcagtagc tgaaggcttg aaaagtgttt tgagtgccct
1681 ccttgagcta aatcacctgt aagttctgac atgtattggt agtggttttc tcatctctgc
1741 g
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