LOCUS AK120159 1854 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013030H09, full insert
sequence.
ACCESSION AK120159
VERSION AK120159.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1854)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1854
/clone="J013030H09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1854
/db_xref="Osa1:LOC_Os08g15840"
/note="(Rice Genome Annotation Project) XBAT32, putative,
expressed"
/note="mapping to R08-TIGRv4S1-000323R (Chr.8: short
arm=9622255, long arm=9626367, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 426 a 428 c 455 g 545 t
ORIGIN
1 gaatattgta gttcctacta caggctctcc attctcgttg ccttgctagc tagccttggc
61 ataggaatcc tttgattgtt ttgtaggtcc agggtgtgtt gaaagagtta aatcaagatt
121 tcgccgaatc tttgcaaggt aatactaatt ttttgtgctt tgataggtag acgcatcatg
181 gggctcttag gtatggtggg cgactcattc ggttgctcag ctactggtga gcggcttgtc
241 tctgctgcaa gggatggaga catccaggag gctatggccc tgttggagct taacccccga
301 cttgcgcggt attcaacgtt tgggatccgg aactcacccc ttcattactc agcagcaaag
361 ggccaccatg agattgtttc tctcctaatt gagtctggtg ttgatatcaa ccccaggaac
421 tgcagaggac agactgctct aatgcaagct tgtctatatg gtcattggaa agttgtacag
481 atcctagttc tttttaaagc taatattcac aaaaaagatt gttttagtgg cgcgacagct
541 attcattttg ccgccctaaa aggtcatact cggtgccttc ggctccttgt ggctgattac
601 gtaccaagct tgccagaatt ttggagtgta atgcacgcaa aatgcacaga tgaaacaaat
661 aaggaagctt ttgatgcggt agctctccgg aggctaataa acaacaagtc tgatgggggc
721 gtcacaccgc ttcacttggc agcccttcat gggcatgctg agtgcgtgca attgctgtta
781 gaccttggag cctctgtttc agaggtcact atcaatgatg gttcaactat tgatctcata
841 ggttcaggaa gcacacctct ccactatgcg gcctgtggtg gaagtgctgt atgctgtcaa
901 cttcttgttg cagccggagc aaacatgaga gctcaaaata ctaacgggtt gacccctttg
961 atggtggctc gttcatggca caaaagtagt gttgaaggta tcctaaccaa acggtcagaa
1021 gttccagtac gcattcttcc atcatcatat ctgtctctcc cactgatgag cattgtcaaa
1081 attgccaggg aatgtgggtg gagaaaaact tctgtctcat ctgtttgcca tgacccatgc
1141 gccatatgtt tggatacgga atgtacagtg tctgcagaag ggtgtggcca tgagttctgc
1201 accaaatgtg cgctctactt gtgcgccacc gctagcagct caacatctat ccgtggtgtt
1261 cctggctcca taccttgccc tttgtgccgc cacacgattg tctcattcgt tagactcaca
1321 agtacaaccc caataaagga gcttccgtgg acgaacaaat cgttagctct atgtgcagca
1381 ggggcaagca ccggttccaa atatgctggt cctgcagcaa tcactagttc caagtatgcc
1441 ggttctttgc accgaaggtc tgagatgcgc agcctgcgct cctcttcagt tgatctaggc
1501 tgctcatcgt ttcgaaccgc gagctcaggg aagctgtcgt cgataaagct gaattgcacc
1561 ggagccgacg agacgatgcc ctgcctcgtc aattgcttca ggccggatgt gcagcggtcg
1621 tcttcgtata gggaaagaat taggagatat tcacaatttt catagcatta ctgtctattt
1681 gtatttgtgc aaacacatcc attttgtgag tttccggggg tttggcagta caaacttgtg
1741 cagtgtttgt tcatgctttt ctcttggctt cttcatacct gtagtctgtt ctgttcttct
1801 gcttgtggtc ttgtaacatg acatgtgatc ctcatggtta agatgtgttt gtgt
//