LOCUS AK120054 2508 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013000L05, full insert
sequence.
ACCESSION AK120054
VERSION AK120054.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2508)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2508
/clone="J013000L05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 873..2459
/db_xref="Osa1:LOC_Os02g49332"
/note="(Rice Genome Annotation Project) CSLE2 - cellulose
synthase-like family E, expressed"
/note="In this case, at least two different ORFs are
predicted"
/note="mapping to R02-TIGRv4S1-001280F (Chr.2: short
arm=30144640, long arm=30147946, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG99856.1"
/translation="MTDRVNSVVNSGRIPEVPRCHSRGFSQWNENFTSSDHPSIVQIL
IDSNKQKAVDIDGNALPTLVYMAREKKPQKQHHFKAGSLNALIRVSSVISNSPIIMNV
DCDMYSNNSESIRDALCFFLDEEQGQDIGFVQYPQNFENVVHNDIYGHPINVVNELDH
PCLDGWGGMCYYGTGCFHRREALCGRIYSQEYKEDWTRVAGRTEDANELEEMGRSLVT
CTYEHNTIWGIEKGVRYGCPLEDVTTGLQIQCRGWRSVYYNPKRKGFLGMTPTSLGQI
LVLYKRWTEGFLQISLSRYSPFLLGHGKIKLGLQMGYSVCGFWAVNSFPTLYYVTIPS
LCFLNGISLFPEKTSPWFIPFAYVMVAAYSCSLAESLQCGDSAVEWWNAQRMWLIRRI
TSYLLATIDTFRRILGISESGFNLTVKVTDLQALERYKKGMMEFGSFSAMFVILTTVA
LLNLACMVLGISRVLLQEGPGGLETLFLQAVLCVLIVAINSPVYEALFLRRDKGSLPA
SVARVSICFVLPLCILSICK"
CDS 1170..2459
/db_xref="Osa1:LOC_Os02g49332"
/note="(Rice Genome Annotation Project) CSLE2 - cellulose
synthase-like family E, expressed"
/note="In this case, at least two different ORFs are
predicted"
/note="mapping to R02-TIGRv4S1-001280F (Chr.2: short
arm=30144640, long arm=30147946, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG99857.1"
/translation="MNVDCDMYSNNSESIRDALCFFLDEEQGQDIGFVQYPQNFENVV
HNDIYGHPINVVNELDHPCLDGWGGMCYYGTGCFHRREALCGRIYSQEYKEDWTRVAG
RTEDANELEEMGRSLVTCTYEHNTIWGIEKGVRYGCPLEDVTTGLQIQCRGWRSVYYN
PKRKGFLGMTPTSLGQILVLYKRWTEGFLQISLSRYSPFLLGHGKIKLGLQMGYSVCG
FWAVNSFPTLYYVTIPSLCFLNGISLFPEKTSPWFIPFAYVMVAAYSCSLAESLQCGD
SAVEWWNAQRMWLIRRITSYLLATIDTFRRILGISESGFNLTVKVTDLQALERYKKGM
MEFGSFSAMFVILTTVALLNLACMVLGISRVLLQEGPGGLETLFLQAVLCVLIVAINS
PVYEALFLRRDKGSLPASVARVSICFVLPLCILSICK"
BASE COUNT 554 a 705 c 694 g 555 t
ORIGIN
1 ggctttggca gcctgagttt cccccgcttg acgagctgcc gcctcaatcc aacatagaaa
61 ctccccacag agaaggggag gagctccagg aagggcgagg gtgccgaccg gcaacggaga
121 agacgaccca ccgccgccag ctccctttac actgccatct gggcttgcgc cgacgccaga
181 gacgcttctg ctgctccggc tccggcgcaa cccaccggcg cccccgtcgc ccggccgccg
241 caccccatct ggccgcgccg catagcccac ccggctgagg agggcaccgc ggcgtcaccc
301 tggctgcccg gctgccgagg cctgcctgcg ccatgggggc tcgccgccgc actgccgagc
361 cgcgcgagcc cgggctgccc ggaccggccg cgcgccgagc tgccgccgcc gctcccagcc
421 gccgccgcct ctaggcagcc gccatcccag ccgtcgagcc accgccaccg cgcccaggct
481 gccgcaccgg gccagccgcg ccgtccctgc cgccgctgcc gccgcccccc cagccacctc
541 gcgccgccgt tgtgccagat ccaggcgtgg ggtggtcgga tccggccttg gaggcgccgg
601 atctgctgcc tccccacacc gcgccgccat cgccacctcc ggccgcggtg gagggtcttc
661 gccggcgtcg tcgtcccgtc cacgtcacgc cggggggagt cgccgggagg aagaacctcg
721 ccgccgcctt ccctgctcgc tgccggcttt gccgccggcg agctccggcg gcggcgaggc
781 agtggggagg gagtggaggc gtgggcggct agggtttttt cgccccctga gccacccgcg
841 cgagagcgac gcgagaggaa ctgtacaaag acatgacaga tcgtgtgaac tcagtagtaa
901 attcaggtag gatccccgag gttccacgat gccattccag aggcttctca cagtggaatg
961 agaatttcac ttctagtgat cacccttcta tagttcagat tttaatcgat agtaacaaac
1021 aaaaggcagt tgatattgat ggaaatgcat tgccaacact tgtatatatg gcacgtgaga
1081 agaaacccca gaaacagcat cacttcaaag ctggatcttt gaatgctttg ataagggtat
1141 catcagtgat aagcaacagt ccaatcatca tgaatgttga ttgtgatatg tactcaaaca
1201 attcagagtc catcagagac gcattgtgtt ttttcctaga tgaagagcaa ggccaagata
1261 ttggttttgt acagtatcct cagaattttg aaaatgtggt gcacaatgac atctatggcc
1321 acccaatcaa tgttgtcaac gagttggatc atccttgctt ggatggttgg ggtggaatgt
1381 gttactatgg cactggatgc ttccatcgga gagaggccct atgtggacga atctatagtc
1441 aagaatataa ggaagattgg actagggtag cagggagaac agaagatgct aatgagttgg
1501 aagaaatggg caggtcactt gtgacttgca catatgagca taacaccatc tggggaattg
1561 agaagggggt taggtatggg tgcccactgg aggatgtaac tacaggatta caaatccaat
1621 gccgtggatg gagatcagtg tactacaacc ccaaaagaaa gggattctta ggcatgacac
1681 ccacctcact aggccagatc ctggtcctgt acaagagatg gacagaaggg ttcctccaaa
1741 tatccctctc acggtacagc cccttcttat taggtcatgg gaagatcaag ctgggtcttc
1801 aaatgggcta ctctgtctgc ggcttctggg ccgtgaacag cttccccacc ttgtactatg
1861 tcacaattcc ttctctttgc ttcctcaatg gcatctccct ctttcctgag aaaactagcc
1921 cctggttcat accctttgcg tacgttatgg tggccgcata ctcctgcagc ttagcagagt
1981 cactgcaatg tggtgacagt gcagtggagt ggtggaatgc acagaggatg tggctcatta
2041 gaaggatcac ctcatacctc ctggcaacca tcgacacatt ccgcagaata ttgggcatct
2101 ctgagtctgg attcaacctg acagtgaagg tcactgactt gcaggccttg gagaggtaca
2161 agaaggggat gatggaattc ggatccttct cggcgatgtt tgtaatcctt acgacagttg
2221 cgctgctcaa cctggcatgc atggtgttag gaattagtag agttttgtta caagaaggcc
2281 cagggggttt ggaaactttg tttctccagg ctgttctgtg tgtactgata gtagccatca
2341 attctccggt ttatgaggcg ctcttcctcc gcagggacaa gggcagcttg ccagcttctg
2401 tcgctcgagt ttccatttgc tttgtgttgc cactctgtat actctcaata tgtaaatgat
2461 attacgtaca gtatgtacaa tgctatatat caggaagaaa ttaaactt
//