LOCUS AK119913 2216 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-183-F01, full insert
sequence.
ACCESSION AK119913
VERSION AK119913.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2216)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2216
/clone="002-183-F01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 31..1908
/db_xref="Osa1:LOC_Os04g57860"
/db_xref="RAP-DB:Os04g0674800"
/note="(RAP Annotation release2) Similar to
CEL1=CELLULASE 1 (Fragment)"
/note="(Rice Genome Annotation Project) endoglucanase
precursor, putative, expressed"
/note="mapping to R04-TIGRv4S1-001277R (Chr.4: short
arm=34231500, long arm=34235280, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG99809.1"
/translation="MAATMNKTPATTFLLIPAAASLVLLLAAAASVEASAFDYAGAFD
KCLLFFEAQRSGKLPDDRLVRWRGDSALTDGFSQGVDLVGGYYDSGDHVKFGLPMAYA
VTMLSWGVVEFEKEMVDGNKLHRVLDAIRWGTNYFVKAHTQHNALWVQVGDGDSDHLC
WERAEDMSTPRTAFKIDINNPGSEVAGETAAALAAAAKAFKPYDRMYSDLLLLHSKQL
FTFADTFRGKYDDSLQSAKKFYPSASGYQDELLWAAAWLYEATGDEQYLRYVSQNAEA
FGGTGWAVTEFSWDNKYAGLQVLLSKVLFEQGGSAAGYADTLKQYQAKAEFFLCACLQ
KNNGHNVKMTPGGLMYVSDWSNMQYVSSSAFLLTVYADYLAESRGTLRCPDGEVKPAE
ILRFARSQVDYVLGKNPKGMSYMVGYGSYYPTHVHHRGASIPSIYAMNATVGCMESFD
KYYNSKNADPNVLHGALVGGPDANDAYDDDRCNYQHAEPTLAGNAPMSGVFARLAASP
ADNTPEYTPAPNAPSPSNGGSPLEFVHTVTNTWKANGVDYYRHVVTAKNTCGHAITYL
KLQIKELSGEIYGVSRTNAKDMYEFPSWMTRLDAGAQLTIVYIQGGPAAKIAVVEYKT
A"
BASE COUNT 415 a 745 c 654 g 402 t
ORIGIN
1 aatccagtat tccactaccg aggtcgagca atggcggcga cgatgaacaa gacgccggca
61 accaccttcc tgctgatacc ggcggcggcg tcgctggttc tcctcctcgc ggcggccgcg
121 tcggtggagg cgtcggcgtt cgactacgcc ggcgcgttcg acaagtgcct cctgttcttc
181 gaggcgcagc gctccggcaa gctccccgac gaccgcctcg tccggtggcg cggcgactcc
241 gccctcaccg acggcttctc ccagggggtg gatttggtgg gcgggtacta cgactccggc
301 gaccacgtga agttcgggct cccgatggcg tacgcggtga cgatgctgtc gtggggggtg
361 gtcgagttcg agaaggagat ggttgacggc aacaagctcc accgcgtcct cgacgccatc
421 cgctggggca ccaactactt cgtcaaggcc cacacccagc acaacgccct ctgggtccag
481 gtgggtgacg gcgacagcga ccacctgtgc tgggagcgcg ccgaggacat gtcgacgccg
541 cggacggcgt tcaagatcga catcaacaac cccgggtcgg aggtcgccgg cgagaccgcc
601 gccgctctcg ccgccgccgc caaggccttc aagccctacg accgcatgta ctccgacctc
661 ctcctcctcc actccaagca gctgttcacg ttcgcggaca cgttcagggg caagtacgac
721 gactcgctgc agagcgccaa gaagttctac ccgtcggcgt ccggctacca ggacgagctg
781 ctgtgggcgg cggcgtggct gtacgaggcg accggcgacg agcagtacct ccgctacgtg
841 tcccagaacg cggaggcgtt cggcggcacc ggctgggccg tcaccgagtt ctcctgggac
901 aacaagtacg ccggcctcca ggtcctcctc tccaaggtcc tcttcgagca gggcggcagc
961 gccgccggct acgccgacac gctgaagcag tatcaggcca aggccgagtt cttcctctgc
1021 gcctgcctcc agaagaacaa cggccacaac gtcaagatga cccctggtgg tctcatgtac
1081 gtgagcgact ggagcaacat gcagtacgtg agctcgtcgg cgttcctcct caccgtctac
1141 gccgactacc tcgccgagtc gcggggaacg ctcaggtgcc cggacggcga ggtgaagccg
1201 gcggagatcc tccggttcgc gaggtcgcag gtcgactacg tcctcggcaa gaaccccaag
1261 gggatgagct acatggtcgg atacggcagc tactacccga cgcacgtcca ccaccgcggc
1321 gcgtccatcc cgtccatcta cgccatgaac gccaccgtcg ggtgcatgga aagcttcgac
1381 aagtactaca acagcaagaa cgccgacccc aacgtcctcc acggcgccct cgtcggcggc
1441 cccgacgcca acgacgccta cgacgacgac cgctgcaact accagcacgc cgagcccacc
1501 ctcgccggca acgcccccat gtccggcgtc ttcgcccgcc tcgccgcctc gcccgccgat
1561 aacacgccgg agtacacgcc ggcgccaaat gccccctcgc catcaaatgg tgggtcgccg
1621 ttggagttcg tgcacacggt gacgaacacg tggaaggcaa acggcgtgga ctactaccgg
1681 cacgtggtga cggcgaagaa cacgtgcggc cacgccatca cctacctgaa gctgcagatc
1741 aaggagctct ccggggagat ctacggcgtc tcccgcacga acgccaagga catgtacgag
1801 ttcccgtcgt ggatgacacg gctcgacgcc ggcgcgcagc tcaccatcgt ctacatccag
1861 ggcggccccg ccgccaagat cgccgtcgtc gagtacaaga cggcctgaga atggcacgac
1921 gacgacgact gatttctgcc tttccttttt tccattttag ttttggtgtg tggttggctg
1981 ctgcttttca gcaaacaggt ggtgtgcaat ctcgaagcaa cgagtctgtg atgtcacctc
2041 tgaccacgac tgctttgaga tgtggacatg cactgtttct tctgtacttg gaatggcata
2101 ggagatctct cagcttttct tttagctttc gtgatttctc cattctttcc gctgtgcacg
2161 cctgtgtgtt ttatatgttc aaattaagca gaaaactgtg acatgatgtt tttgct
//