LOCUS AK119761 1732 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-171-G03, full insert
sequence.
ACCESSION AK119761
VERSION AK119761.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1732)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1732
/clone="002-171-G03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1732
/db_xref="Osa1:LOC_Os08g36910"
/note="(Rice Genome Annotation Project) alpha-amylase
isozyme 3D precursor, putative, expressed"
/note="mapping to R08-TIGRv4S1-000736F (Chr.8: short
arm=23208514, long arm=23210456, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 373 a 506 c 527 g 326 t
ORIGIN
1 aacgaacaca tcgatcatcc atcatctaca agagatcgat cagtagtggt tagcagcaac
61 tcactatcga acacggtttc agcttacaca gatatgaaga acaccagcag cttgtgtttg
121 ctgctcctcg tggtgctctg cagcttgacc tgtaactcgg gtcaagcaca ggtcctcttc
181 cagggtttca actgggagtc gtggaagcag cagggtggct ggtacaacat gttgaaaggc
241 caagtcgacg acatcgccaa ggccggggtc acccacgtct ggctgccgcc gccgtcgcac
301 tccgtggcgc cgcaggggta catgccgggg cgtctctacg acctggacgc gtccaagtac
361 ggcacggcgg cggagctcaa gtcgctgatc gcggcgttcc acgggaaggg cgtccagtgc
421 gtcgccgacg tcgtgatcaa ccaccggtgc gccgagaaga aggacgcccg cggcgtgtac
481 tgcgtgttcg agggcgggac gcccgacgac cgcctcgact ggggccccgg catgatctgc
541 agcgacgaca cgcagtactc cgacggcacg ggccaccgcg acaccggcga ggggttcggc
601 gcggcgcccg acatcgacca cctcaacccg cgcgtccagc gggagctcac cgactggctc
661 aactggctca agtccgacgt cggcttcgac ggctggcgcc tcgacttcgc caagggatac
721 tccacggaca tcgctaagat gtacgtcgag agctgcaagc cgggcttcgt cgtcgccgag
781 atatggaact cgctgagcta caacggcgac ggcaagccgg cggccaacca ggaccagggc
841 cggcaggagc tggtgaactg ggtgaacgcc gtcggcgggc cggcgatgac gttcgacttc
901 accaccaagg gcctcctgca ggcgggcgtc cagggcgagc tgtggcggct gcgcgacggc
961 aacggcaagg ccgccggcat gatcgggtgg ctgccagaga aggccgtcac gttcgtcgac
1021 aaccacgaca ccggctcgac gcagaagctt tggccgttcc cctccgacaa ggtcatgcag
1081 ggctacgcct acatcctcac ccaccccgga gtcccctgca tcttctacga ccacatgttc
1141 gactggaacc tgaagcagga gataaccgcg ctggcggcga tcagggagag gaacggcatc
1201 aacgccggga gcaagctccg gatcgtcgtc gccgacgccg acgcatacgt cgccgtcgtc
1261 gacgagaagg tcatggtgaa gatcgggacg aggtacgacg tgggcaacgc ggtgccgtcg
1321 gatttccatc agacggtgca cggcaaggac tacagcgtct gggagaaggg gtccctccgc
1381 gtcccggcgg ggcggcacct atagcgggct caagccctaa actgaacggg atagtcatgc
1441 tcaaaccagt ttctacacgg caagaattta ctgattctta tacttttgca gtcaattaaa
1501 ttatggtttt tatatatgta attttgtatc cgattgtagc gttcgaataa gtaggcaggc
1561 tctctagcct ctaggttaat tgcggggcat atgtagcttg ccagttaatt gtgtttgtat
1621 cacgcagttt gtaaccgttg gtgcaatata taatgtcagg ttcaggatgc agtaaaaaat
1681 catactgcac cgatcagtga gtttttatat actcctttta aaagtgagca cc
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