LOCUS AK119748 2374 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-165-F11, full insert
sequence.
ACCESSION AK119748
VERSION AK119748.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2374)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2374
/clone="002-165-F11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2374
/db_xref="Osa1:LOC_Os05g03610"
/db_xref="RAP-DB:Os05g0127200"
/note="(RAP Annotation release2) Similar to Phospholipase
C (Fragment)"
/note="(Rice Genome Annotation Project) phospholipase C,
putative, expressed"
/note="mapping to R05-TIGRv4S1-000086F (Chr.5: short
arm=1513789, long arm=1519568, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 567 a 605 c 710 g 492 t
ORIGIN
1 acaccacttg ggctaatgca gcggttgttt tcttctacct catcatcatt cttatatatc
61 taagttacca tgtcgatctg ttccaaaata taagggattt tgacgatata tctgatatat
121 aattaataga ttctctcgct atgtgtatat atatagctag gtagctgagc aagcagctgg
181 tcatcacgga tcaagaagaa gattagctta gctagctaaa aagtaagtag ccgtgcgaag
241 tcgccggcgg tgatcagccg gcgatgacga cgtacagggt gtgctgcttc ctgcggcggt
301 tcagggcggc gtcgaacgag ccgtcggagg agctcggcga cgtgttccag gcgtacgccg
361 acggcggcgg cggcgtgatg ggggaggagg cgctgaggcg gttcctccgg gaggtgcagg
421 gggaggccgc cggcggcggc gacgacgagc tggaggcgac ggcgagggag gtgatggcct
481 tcgcggcgga gcagaggctg ctcaggaagg gcggcgccgc tgccgccggc ggcgggctca
541 ccgtcgaggg cttccaccgc tggctgtgca gcgacgccaa cgctgcactg gatcctcaga
601 aacgggtata tcaagacatg ggattgcctc tgtcacacta cttcatctac acggggcaca
661 actcatacct gacggggaac cagctgagca gcgggtgcag cgaggtgccc atcgtgtagg
721 ccctccacga cggcgtccgt gtcatcgagc tcgacctctg gcccaacgct gccaaggacg
781 ccgtcgaggt cctccacggc aggacgctga catcgccagt gggtctgatg aaatgccttg
841 aggccatcag ggagtacgcg ttcgtcgcct ccccttaccc cgtcatcctc accctcgaag
901 atcacctcac tcccgacctc caatccaaag tcgccaagat gatcaaggag acgttcggtg
961 acatgctcta cgtctctgaa actgagaaca tggcggaatt cccttcgccg gacgagctca
1021 aggggaagat catcgtgtcg acgaagccgc ccaaggagta cctccagacc aagaacgacg
1081 ccgacgccga cgaggccggc gtctggggcg aggagatcac cgacgacaag gtggcggcga
1141 cggcgatgac gacagaagag aaatgcgcgg cggcggagga agcagtcgcc gccgccgccg
1201 tcgacgagga gatgcaggag gccgagacgg acaagaagac gcagcacggg gtggacaacg
1261 agtacaggcg cctcatcgcc atccctctga caagaagaaa gcacgacatg gatcaggacc
1321 tcaaggtcga tcccgacatg gtgacgcgcc tcagcctcgg ggagaaggcc tacgagaagg
1381 ccattgtcac ccatggagct cacattatca ggtttacgca gaggaaattg ctgaggatat
1441 tccctcggtc gacgcgcatt acgtcttcga attataatcc tttgatgggt tggaggtatg
1501 gagttcggat ggttgcagca aacatgcagg gccatggaag aaagctgtgg ctgactcagg
1561 ggatgttccg agcaaacggc ggttgcggtt acgtcaaaaa gcctgatatt ctgatgaaca
1621 acgatccaga taaactgttt gatcctacat ccaaactacc agtaaagaca agactaaagg
1681 tgacggtgta catgggagac ggatggcgat tcgacttccg caagacacat ttcgacaaat
1741 gctcaccccc agacttctat gcaagggtgg gtatagccgg agtagaagca gacacgagga
1801 tggagcagac gaaggtgaag atggacacgt ggattccggc atgggatcac gagttcgagt
1861 tcccgttgag cgtgccggag ctggcgctgc tccgggtgga ggtgcatgag tccgacaacc
1921 accagaagga cgacttcggc gggcagacct gcctgccggt gtgggagctc cggcgaggca
1981 tccgctccgt caggctctgc gaccaccgcg gcgagcccct ccgctccgtc aagctcctca
2041 tgcgcttcga cttcacctga ctactccatc ttcttcttca tcatcgtcat cgtcttggta
2101 gtagtagttc catgtgtgat atcatgaggg atgaagcatt gatcgtactt tctccgtccc
2161 gaaatatagc aatgtaggat tagatggaaa catcttaata ctacgaatct ggatatgtcc
2221 tatctggttc tggtttgcta tgttttagga cgaatatagt acataaaatt ttagaagttt
2281 tgttttaaaa aagaataaat tttgtgcgaa acggaaggtg tgattgtaca ttttgtacgt
2341 acattgtttg ttgttgatta ataaacgtgt taat
//