LOCUS AK119647 1660 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-130-G07, full insert
sequence.
ACCESSION AK119647
VERSION AK119647.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1660)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1660
/clone="002-130-G07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1660
/db_xref="Osa1:LOC_Os03g08050"
/note="(Rice Genome Annotation Project) elongation factor
1-alpha, putative, expressed"
/note="mapping to R03-TIGRv4S1-000296F (Chr.3: short
arm=4089485, long arm=4092700, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 368 a 442 c 443 g 407 t
ORIGIN
1 ctcccgtctc accctagccg ccgccgcctc ctcctcctct cgccttctcc cgtcttctcc
61 ttcgagttag ctacctcctt attcaaccat gggtaaggag aagacgcaca tcaacatcgt
121 ggtcattggc cacgtcgact ccggcaagtc gaccaccacg ggccatctga tttacaagct
181 tggaggtatc gacaagcgtg tgatcgagag gttcgagaag gaagccgctg agatgaacaa
241 gaggtccttc aagtacgcgt gggtgcttga caagctcaag gccgagcgtg agagaggtat
301 caccatcgat attgccctgt ggaagttcga gaccaccagg tactactgca cggtcatcga
361 tgcccctggt caccgtgact tcatcaagaa catgatcacg ggtacctccc aggctgactg
421 tgccgtgctc atcattgact ccaccactgg tggttttgag gctggtatct ccaaggatgg
481 ccagacccgt gagcacgctc ttcttgcttt cactcttgga gtgaagcaga tgatctgctg
541 ctgcaacaag atggatgcca ccactcccaa gtactccaag gcccgttatg atgaaatcgt
601 gaaggaagtc tcatcctacc tgaagaaggt cggctacaat cctgacaaga ttcccttcgt
661 tcccatctct gggtttgagg gtgacaacat gattgagagg tccaccaacc ttgactggta
721 caagggcccc accttgcttg aggctcttga ccagatcaac gagcccaaga ggccatcaga
781 caagcccctg cgtcttcccc ttcaggacgt gtacaagatc ggtggtattg gcaccgtgcc
841 tgtgggtcgt gttgagactg gagtcctcaa gcctggtatg gtggtgacct ttggtcccag
901 tggcctgacc actgaggtca agtcggttga gatgcaccac gaggctctcc aggaggctct
961 tcctggtgac aacgtcgggt tcaacgtgaa gaacgttgcg gtgaaggatc tgaagcgtgg
1021 gtacgtggcc tccaactcca aggatgaccc tgccaaggag gctgccagct tcacctccca
1081 ggtgatcatc atgaaccacc ctgggcagat cggtaacggc tatgctccag tgctggactg
1141 ccacacctcc cacattgctg tcaagtttgc tgagctggtg accaagattg acagacgatc
1201 tggcaaggag ctggagaagg agcccaagtt cttgaagaac ggtgatgctg gtatggtcaa
1261 gatgattcct accaagccca tggttgtgga gaccttctct gagtaccctc ctcttggtcg
1321 ttttgcggtg cgtgacatga ggcaaacggt ggctgttggc gtcatcaaga acgtggagaa
1381 gaaggaccca accggtacca aggtgaccaa ggctgccgcc aagaagaagt gagcctcgtt
1441 caaatggtgg tttgcatgtc tgcagttgag atatctagtt ctagtatttg ttaagttttg
1501 cccacggcca tggctctcgt ttcatggacc gttaatatct gctcgcaatg tgcactatgt
1561 cagtcgttta atactcgttt atttctgttc ggttaaaact gatgctctga gtccgattat
1621 tgtccatcgg ctgttttgga atgcgagtat ttacattgct
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