LOCUS AK119633 1830 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-130-E12, full insert
sequence.
ACCESSION AK119633
VERSION AK119633.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1830)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1830
/clone="002-130-E12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1830
/db_xref="Osa1:LOC_Os01g72520"
/note="(Rice Genome Annotation Project) hydrolase, acting
on ester bonds, putative, expressed"
/note="mapping to R01-TIGRv4S1-001985R (Chr.1: short
arm=42390152, long arm=42394632, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 393 a 570 c 566 g 301 t
ORIGIN
1 gggtccatca cgagctcccc tccccacaca ccacctcact cccactacga gagaggagga
61 agctcgcaat catcgaatca atggcggttc gccgccggcg acccggcccc gtggcggccg
121 ccgtgctgct gctactcgcg gtggcgaccc aggcggcggc gagcccgata aagacggtgg
181 tggtggtggt gatggagaac cggtcgttcg accacatgct ggggtggatg aagcggctga
241 acccggagat cgacggcgtg accggcggcg agtggaaccc gacgaacgcc agcgacccgt
301 cgtcggggcg cgtctacttc ggcgagggcg ccgagtacgt ggacccagac ccgggccact
361 cgttccagga gatccggcag cagatattcg ggtcggacga cgcgtcgggg ccggcgagga
421 tggacggctt cgtgcagcag gcgcggtcgc tgggggacaa catgacggcg gccgtcatga
481 acggcttctc gccggacagc gtcgccgtgt accgggagct cgtcggggag ttcgcggtgt
541 tcgaccggtg gttcgcgtcc gtgccgtcgt cgacgcagcc caaccgactg ttcgtgcact
601 ccgccacatc cggcggcgcc accagcaaca acccagagct gctggcgaag ggctacccgc
661 agcgtacaat cttcgacaac gtgcacgacg ccgggctgtc gttcggggtc tactaccagg
721 acgtgccggc ggtgctcttc taccgcaacc tgcggaagct caagtacctg accaagttcc
781 acccgttcca cggcgcgttc cgcgaccacg ccgcccgcgg ctccctccca aactacgccg
841 tggtggagca gcactacatg gactccaagt cccacccggc caacgacgac cacccgtcgc
901 acgacgtctt ccagggccag atgctcgtca aggaggtgta cgagacgctc cgcgccagcc
961 cgcagtggaa ccagacgctc atggtcgtca cctacgacga gcacggcggc ttctacgacc
1021 atgtccccac ccccgtcacc ggcgtcccca gccccgacgg catcgtcggc ccgccgccgt
1081 ataacttcgc ctttgatcgc ctcggcgtcc gtgtcccagc catcgtcatc tccccctgga
1141 tcaacaaggg tacagttgtt cgtgggccaa acgggagccc aaccgcgacg tcggagtacg
1201 agcactcgtc catccccgcg accgtgaaga aactcttcga tctgccacag gatttcctga
1261 ctaaaaggga cgcctgggct ggaacgtttg agagtgtcgt gcaaggcaga actgagccaa
1321 ggacggattg cccagagcaa ctcccaatgc cgatgaggat acggctgacg gaggcgaacg
1381 aggaggcgaa gctgagtgag ttccagcagg agctggttca gctggcgtcg gtgctcaacg
1441 gggaccacca gctgagcagc ctgcaggaca cgatcaggga caggatgaac gtcagggaag
1501 gcatcgcgta catgcggggc gctgtaaagc gcttcttcga gaccggcatg tcagccaaga
1561 ggatgggcgt cgacgacgag cagatcgtca agatgaggcc atcgctcacc accaggacat
1621 cccctgcgat cgagcaacca tagaaataga aacaagagca atagaagcaa ataaggatac
1681 aggtttattt tatatgctga aaaagaaaaa aaatcatggt gcttgcatat atgtagcaga
1741 gccagcaagg agtgctttgt tctagaatta gttgagatct ctcatggatc gatctatata
1801 catggccggg ctgtactgta caaattgatg
//