LOCUS AK119626 1737 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-117-H11, full insert
sequence.
ACCESSION AK119626
VERSION AK119626.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1737)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1737
/clone="002-117-H11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1737
/db_xref="Osa1:LOC_Os05g40330"
/db_xref="RAP-DB:Os05g0481900"
/note="(RAP Annotation release2) Auxin Efflux Carrier
family protein"
/note="(Rice Genome Annotation Project) auxin hydrogen
symporter, putative, expressed"
/note="mapping to R05-TIGRv4S1-000845R (Chr.5: short
arm=23614536, long arm=23617464, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 384 a 386 c 464 g 503 t
ORIGIN
1 cttgctattt ttggctacaa gttcgccgcc ccgggcagct gcttggccgt cgcgacgcag
61 ccgcgtctgt tcgatcagtt cagctcgcgc ggttttaggt ggggaggaat cctgttcgat
121 ttcgccggtt gcttgtggtt tcgtgtcgga ggcgggggcg gcgatgatgg ggaggtcggt
181 gctggagatg gtggtggcgg cggcgcaggg cggcggcggc gcggcggggg agtcggtgtt
241 gggcatgttc aggtacgccg tgctgcccat cgccaaggtg ttcgtcgtct gcttcatggg
301 gttcctcatg gcgtccaagc gcgtcggcgt gctcaagccc agcggccgca agcttctcaa
361 tgcgcttgtg ttctctctgc tccttccttg cctaatattt gcgcagctcg ggagatcaat
421 cacaattgac aagatcatgg agtggtggtt cattccagca aacattgctc tgggtgcagt
481 ctctgcatct ttggttggac ttatagtggc atcgattgta cggccgcctt atccatactt
541 caagttcacc atcactcaca ttggaatagg gaacattgga aatataccac ttgtccttat
601 ctcggcatta tgtcgcgacc aattaaatcc gtttggtgac tcgaacaaat gtactcaaga
661 tggaaatgca tacttatcat ttggtcgatg ggttggtgcc attattgttt acacatatgt
721 gttcaagatg cttgctccac cccccgggca gacctttgac agctgcgatg aggagagaga
781 taaacttcca attaaggctc ctaataccat gtcaagtgta gcgaaatatc catcaagtgc
841 tcatggcaat acacatgagg aagagcccct gctatctata gaggaggagg aggaggagga
901 ggggcaggac gttcattctt taggttcaaa aataatgatt cctatcaagg gcatggttag
961 attcctacaa aagaagcagc tcctccaacc accaatcatt gcatctgttc ttgcaattac
1021 tctcggtgtt gtgccattct tgaagaattt gatcctcaca gatgacgcgc ctctattctt
1081 tttaacagat agctgtctca ttcttgggga agctatgatt ccgtgcattt tgcttgccgt
1141 tggtggcaat cttgttgacg gccctggtga aggaagtagg agacttgggg ttcggaccac
1201 cgtcgcatta tatttgcacg cttgatattg gttccaattg ctggtattgg catcgtctca
1261 tttgctgaca agcttggatt tattccaaaa ggagacaaga tgttcaagtt cgtcctgtta
1321 ctgcagcact ctatgcccac atcggtacta tcaggtgctg ttgcaaacct aagaggttgt
1381 ggcaaggaat cagctgcaat cttgttctgg gtgcacattt ttgctgtctt ctccatggca
1441 ggatggatta tcttatatct taccatgctg ttctagatac taactgcact atgacataat
1501 atgatatgtt catgaaatac atgttgctgc aaagtgcaag gtgattggaa gtgcgaccct
1561 gttggatctg cgggttgcat tttccgggcc gtggacaatt gcgagaggcc tgctattgta
1621 tgttttgttt ggttagctgc tgaaaacaat agatgaggca aaggaattgt gtcagcacct
1681 cttgtacatt tgatcgtaaa atacaggata tctccaacta atagggagcc ttgtatc
//